Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M20
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.2  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   7.3  
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    25   7.3  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    25   7.3  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    24   9.6  

>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +1

Query: 82  TPRVAAGRHQDPNNSQEHRTPGDQPKQPVYLVAAVPLDVSGAQRQRHRLQPGG-NPADPH 258
           TP   +     P N Q    P    +QP+Y  A+VP  +S      + L      P   H
Sbjct: 323 TPNQPSYLESKPGNHQ----PSYTSEQPMYSTASVPQQISNGPTAVNGLPMNSYTPHSNH 378

Query: 259 VRALAPN 279
           + + +PN
Sbjct: 379 LHSPSPN 385


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 148 DQPKQPVYLVAAVPLDVSGAQRQRHRL 228
           D  K  VYLV+A PL+  G +R+  RL
Sbjct: 292 DVSKHDVYLVSARPLEEQG-ERESQRL 317


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 106 HQDPNNSQEHRTPGDQPKQPVYLVAAVPLDVSGAQRQRHRLQPGGN 243
           H DPN+S +   PGD  +    L+  + ++    + QR  ++ GG+
Sbjct: 386 HPDPNDSDKMVMPGDNVEMICTLIHPIVIE----KGQRFTVREGGS 427


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 321 RVPAWTIGRSASHPAAGVRSTPDSPPSYTQRLAIKHTNN 437
           R PA  +  ++SHP+  V S  D+  S    L+   T +
Sbjct: 333 RAPAIIVRETSSHPSTAVPSENDTTESENDTLSESSTTS 371


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 302 AGVGSVEGAGVDHRQVCKPSSR 367
           AGVG    +G  HR   +PSS+
Sbjct: 62  AGVGGTRASGYTHRFSIRPSSQ 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,324
Number of Sequences: 5004
Number of extensions: 37399
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)