Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M19
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    27   1.4  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   1.8  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   1.8  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   4.3  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    24   9.8  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    24   9.8  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 169 VVAVTRVDLLRXC-QSYNEDGEQNEQLREHFEQFSK 65
           ++ V R +L+R C   +NE  E  E  +  ++ FSK
Sbjct: 383 IMKVIRKNLVRRCLDMFNEIAEDKENFKTFYDAFSK 418


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 153 LVTATTITDIRIQATSVIPDTVPWPMDRTVAMLPL 257
           +V  TTIT +     +++ +T+  PM+ T  +LP+
Sbjct: 120 MVETTTITPMVEAMITLMEETMTTPMEETTTILPM 154


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +1

Query: 1   RPADEQIFFKSSRAGVLSHQSTLKTAQNVRATVHSVRRPRCSSGKXSTDLLWLRLQ 168
           R   EQ FFK   +      STL+   N  ++  S +    S  K    L WL L+
Sbjct: 55  RKKSEQDFFKMLSSRDRDAHSTLRKRSNSLSSFLSTKSTSASENKFHGGLNWLSLK 110


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 28  KSSRAGVLSHQSTL 69
           +S R G+LSHQSTL
Sbjct: 468 RSERTGLLSHQSTL 481


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 217 SPGLWIVRWLCCLSIQP 267
           S GLW  RW+  +  QP
Sbjct: 225 SEGLWFTRWMQLIKDQP 241


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 103  SVRRPRCSSGKXSTDLLWLRLQQLRIYVSRLRR 201
            S  R    + K  +D L L L +LR+Y+S L +
Sbjct: 902  STFRRAVENWKYKSDYLQLNLVRLRVYISVLEK 934


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,073,144
Number of Sequences: 5004
Number of extensions: 16547
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)