Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M19
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611...    28   3.1  
12_02_0202 - 15465885-15466241,15466539-15468122                       27   5.5  
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311...    27   7.2  
01_01_0536 - 3926450-3928447                                           27   7.2  
08_01_0049 - 346200-347213                                             26   9.6  
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549...    26   9.6  
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270...    26   9.6  

>12_02_0117 -
           13860418-13860524,13860612-13860810,13860969-13861148,
           13861230-13861375,13862185-13862323,13863076-13863153,
           13863654-13863722,13863806-13863925,13864792-13864875,
           13864961-13865032,13865204-13865345,13866016-13866023
          Length = 447

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +1

Query: 13  EQIFFKSSRAGV----LSHQSTLKTAQNVRATVHSVRRPRCSSGKXSTDLL 153
           EQIF  SS AGV    +  Q   + ++ V   V+ +RR RCS  + S  +L
Sbjct: 332 EQIFGVSSLAGVPNQLVLEQYDNELSRKVNEVVNEIRRQRCSYLRYSLQVL 382


>12_02_0202 - 15465885-15466241,15466539-15468122
          Length = 646

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
 Frame = -1

Query: 307 CLRKYQLVAVAVAEVV------WRGSIATVRSIGQGTVSGITDVAWIRISVIVVAV-TRV 149
           C R   + A A AE +        GS   +      +V  +  +   R ++I+  V T V
Sbjct: 440 CSRGIGVRAAAAAEALVMLSSKMEGSAMIIMKANNNSVDNLVKILLDRDNIILFRVATAV 499

Query: 148 DLLRXCQSYNEDGEQNEQLR 89
            L R C +Y ED E  + L+
Sbjct: 500 ILERLCANYTEDDECLQNLK 519


>02_01_0425 -
           3102629-3104692,3106505-3108546,3109918-3109989,
           3110157-3111444
          Length = 1821

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 10  DEQIFFKSSRAGVLSHQSTLKTAQNVRATVHSVRRPRCSSGKXSTDLLWLRLQQL 174
           D+ + +   + G+ S +S  K  + +    +S   P  SSG   +D +W RL +L
Sbjct: 77  DDVVGWHYDKRGLFSMKSAYKVQKEIERR-NSRSAPASSSGGAQSDQVWKRLWKL 130


>01_01_0536 - 3926450-3928447
          Length = 665

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 271 AEVVWRGSIATVRSIGQGTVSGITDVAWIRISVIVVAVTRVDLLRXC 131
           A V+W   I+     G+  +S  + V  +R S +  AVT V +L  C
Sbjct: 125 APVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSAC 171


>08_01_0049 - 346200-347213
          Length = 337

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = -1

Query: 286 VAVAVAEVVWRGSIATVRSIGQGTVS----GITDVAWIRISVIVVAVTRVDLLRXCQSYN 119
           V   V EV +R  +    + G G  S    G+  +A +   V++  V +  +   C+SY+
Sbjct: 243 VVFIVVEVAFRAWVVRGATHGLGAGSRLLLGLAMLAALCAVVMLALVVQTVVYLVCKSYH 302

Query: 118 EDGEQNEQLREHFEQF 71
            +      L +H E +
Sbjct: 303 HESIDKSNLSDHLEVY 318


>03_02_0859 -
           11853928-11854138,11854225-11854683,11854760-11854991,
           11855064-11855187,11855276-11855960,11856429-11856735,
           11856832-11858188
          Length = 1124

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = -1

Query: 307 CLRKYQLVAVAVAEVVWRGSIATVRSIGQGTVSGITDVAWIRISVIVVAVT 155
           C R   L    + +++ + +     +IG GT  G  DV+ I+++ + + ++
Sbjct: 796 CCRVAPLQKAGIVDLIKKRTSDMTLAIGDGTFPGANDVSMIQMADVGIGIS 846


>02_04_0130 +
           20025414-20025531,20026357-20026585,20026909-20027032,
           20027441-20027497,20027613-20027804,20027882-20027959,
           20028437-20028619,20028715-20028795,20029196-20029228,
           20029448-20029513,20029591-20029683,20030106-20030231,
           20030395-20030508,20030973-20031068,20031159-20031256,
           20031416-20031831,20032025-20032473,20032810-20032905
          Length = 882

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -3

Query: 224 PGDCIRDNRRSLDTYIRNCCSRNQSRSVEXLPELQRGRRTE*TVARTF*AVFKVD 60
           P    R + RSL+   ++C    +  + E LP++ R  R + T +    A F  D
Sbjct: 674 PRHSSRSSGRSLEESDKSCPENTEGEAKENLPDVLRTTRDDATTSSNGEAFFSSD 728


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,961,592
Number of Sequences: 37544
Number of extensions: 110405
Number of successful extensions: 411
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)