Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M19
         (397 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_26537| Best HMM Match : TipAS (HMM E-Value=8.4)                     27   4.2  
SB_52236| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       27   5.5  
SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     27   7.3  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_56330| Best HMM Match : PP1_inhibitor (HMM E-Value=8.4)             26   9.6  

>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1820

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 37   RAGVLSHQSTLKTAQNVRATVHSVRRPRCSS 129
            + GVLSHQ     + +   T+  ++RP C S
Sbjct: 1053 KVGVLSHQGPKSFSDSQGVTIVGIQRPNCQS 1083


>SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2032

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 22  FFKSSRAGV---LSHQSTLKTAQNVRATVHSVRRPRCS 126
           FF +S  GV   L+H  TL  A + +   HSV  P C+
Sbjct: 26  FFSASGTGVEAFLTHDGTLVVASSNKREYHSVMVPDCN 63


>SB_26537| Best HMM Match : TipAS (HMM E-Value=8.4)
          Length = 233

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 22  FFKSSRAGV---LSHQSTLKTAQNVRATVHSVRRPRCS 126
           FF +S  GV   L+H  TL  A + +   HSV  P C+
Sbjct: 190 FFSASGTGVEAFLTHDGTLVVASSNKREYHSVMVPDCN 227


>SB_52236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 202 LSRIQSPGLWIVRWLCCLSIQP 267
           LS +  PGL ++R LC LS QP
Sbjct: 18  LSNVFLPGLTLIRSLCTLSNQP 39


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 169 VVAVTRVDLLRXCQS-YNEDGEQNEQLREHFEQFSK 65
           ++ V R +L++ C   +NE  E  +  ++ +EQF K
Sbjct: 339 ILKVIRKNLVKKCMELFNEIAEDQDNYKKFYEQFGK 374


>SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 178 SVIVVAVTRVDLLRXCQSYNEDGEQNEQLREHFEQ-FSKLTDERGHRRVT 32
           SV  + V+ VDL R C    E   QN   +  F   FS L ++  H++++
Sbjct: 163 SVQHIEVSCVDL-RVCVQLYEQNTQNANAKMMFSNLFSTLNEQEAHKKIS 211


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 115 DGEQNEQLREHFEQFSKLTDERGHRRVT 32
           +G  N   +EH  Q  +L DE   +RVT
Sbjct: 265 EGAHNSSAQEHAHQLQELRDEMEQQRVT 292


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +3

Query: 45   CPLSSVNFENCSKCSR--NCSFCS 110
            CPL++ +  +C+KCS+  N S CS
Sbjct: 1284 CPLNANSSSDCTKCSQGWNASDCS 1307


>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 103 NEQLREHFEQFSKLTD 56
           NE LRE+FE + +LTD
Sbjct: 27  NETLREYFEAYGELTD 42


>SB_56330| Best HMM Match : PP1_inhibitor (HMM E-Value=8.4)
          Length = 160

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 214 VSGITDVAWIRISVIVVAVTRVDLLRXCQSYNEDGEQNEQLREHFEQFSKLTDE 53
           + G  DVA+ +I V+V  + R+D     Q+ N+  E  E+  E   + +  TDE
Sbjct: 55  LEGQLDVAFNKIKVVVGELQRID-NDLIQNVNDSDELRERTEECERRQANNTDE 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,230,676
Number of Sequences: 59808
Number of extensions: 129728
Number of successful extensions: 510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)