Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M17
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634...    29   5.8  
06_01_0862 + 6533161-6533361,6533919-6534155                           28   7.7  

>03_02_0199 -
           6347980-6348225,6348300-6348341,6348824-6348978,
           6349369-6349475,6349608-6349733,6349809-6349890,
           6350057-6350130,6351184-6352631,6353391-6353540,
           6353664-6353906,6354009-6354266,6355554-6356015
          Length = 1130

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = -2

Query: 290 TLQLLPFRSANRVSRKLASKSCATGSNGRRKAIELGLPAISN*AAAKESCATLV**DILH 111
           +LQLLP      +SR   +K        + + ++LG   + + ++  E+C  +V   ++ 
Sbjct: 193 SLQLLPAVETLDLSRNQFAKVDNLRKCTKLRNLDLGFNHLRSISSLSEACGRIV--QLVL 250

Query: 110 QNNDIYVFRGFKGLK-MWELD 51
           +NN +    G K LK + +LD
Sbjct: 251 RNNALTTLHGIKNLKSLMDLD 271


>06_01_0862 + 6533161-6533361,6533919-6534155
          Length = 145

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 643 DSALEAGTSVTGGQTVINPWCTIGGVATTI-CXPNEYIV 756
           DS   + + + G + V+ PW   GG ATTI   P E+++
Sbjct: 39  DSISFSYSGIDGQEHVVGPWGGNGGHATTIMLGPTEHVI 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,101,947
Number of Sequences: 37544
Number of extensions: 505477
Number of successful extensions: 1145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)