Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M17
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)             227   6e-60
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)                 31   1.5  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 29   5.9  
SB_44587| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_15412| Best HMM Match : zf-CCHC (HMM E-Value=0.22)                  28   7.8  

>SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score =  227 bits (556), Expect = 6e-60
 Identities = 106/143 (74%), Positives = 121/143 (84%)
 Frame = +1

Query: 385 IGIGLDCSVTPLRHGGLCLVQTTDFFYPLVDDPYMMGKIACANVLSDLYAMGVTECDNML 564
           IGIGLD  V P RH G+ LVQTTDFFYPLV+DPY+ GKIACANVLSDLYAMGVTECDNML
Sbjct: 311 IGIGLDSCVLPTRHKGISLVQTTDFFYPLVNDPYVQGKIACANVLSDLYAMGVTECDNML 370

Query: 565 MLLGVSTKMTEKERDVVIPLIMRGFKDSALEAGTSVTGGQTVINPWCTIGGVATTICXPN 744
           MLLGVS +MT KER+VV PL++ GF D ALEAGT+V GGQTV+NPW  IGGVA+++    
Sbjct: 371 MLLGVSNQMTLKEREVVTPLVISGFNDLALEAGTTVNGGQTVLNPWFIIGGVASSVVAKG 430

Query: 745 EYIVPDNAXMGDVLVLTKPLGTQ 813
           E I+P+NA +GDVLVLTKPLGTQ
Sbjct: 431 EAIMPENAEVGDVLVLTKPLGTQ 453


>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1127

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -2

Query: 689 TVCPPVTDVPASKAESLNPRII-RGITTSRSFSVIFVETPNNMSILSHSVTPIAYRSLRT 513
           T+C P+T  P S      P ++   I+T  S +VIFV     M    H  TP+   S R 
Sbjct: 643 TLCHPIT--PTSVTFRDPPAVVVTFISTIGSITVIFVV----MVFYRHGNTPLVRSSSRL 696

Query: 512 LAHAIL-PIIYGSST 471
           L+H +L  II G +T
Sbjct: 697 LSHVMLFGIILGYAT 711


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 472 VDDPYMMGKIACANVLSDLYAMGVTEC---DNMLMLLGV 579
           VDDP ++G + C +V   L   G  +C   D+ L++ GV
Sbjct: 174 VDDPLLVGYVDCYDVNDPLLVEGYVDCYNVDDPLLIKGV 212


>SB_44587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 876

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -1

Query: 807 TKRFCQDQYITHXCIIRYNVLIRXADSGSNPTNC-APGVDDSLPTSDRRSC 658
           TKR  +D +  H  I R     +    G NP NC AP V  +  T    +C
Sbjct: 201 TKRLGRDDFRFHLRITRAFTRFKTCAQGYNPPNCTAPCVPANNSTQGHYTC 251


>SB_15412| Best HMM Match : zf-CCHC (HMM E-Value=0.22)
          Length = 542

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 100 SLFWC-NMSYQTSVAQDSLAAAQLEMAGNPNSIALRRPFDP 219
           S FWC    Y+T   +D LAA  + +  N   I  + P  P
Sbjct: 245 SKFWCPGCEYETEDVKDELAAVLISVHSNGTHITNQTPSTP 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,665,155
Number of Sequences: 59808
Number of extensions: 580082
Number of successful extensions: 1395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)