Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M17
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021488-2|CAA16367.2| 378|Caenorhabditis elegans Hypothetical ... 233 1e-61
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr... 32 0.56
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 31 1.3
U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical pr... 30 2.3
U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical pr... 30 2.3
U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical pr... 30 2.3
AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin re... 30 2.3
AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin re... 30 2.3
AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin re... 30 2.3
U46669-3|AAA85744.2| 737|Caenorhabditis elegans Regulator of g ... 28 9.1
AF106573-7|AAC78158.1| 838|Caenorhabditis elegans Hypothetical ... 28 9.1
>AL021488-2|CAA16367.2| 378|Caenorhabditis elegans Hypothetical
protein Y45F10A.4 protein.
Length = 378
Score = 233 bits (569), Expect = 1e-61
Identities = 112/201 (55%), Positives = 147/201 (73%)
Frame = +1
Query: 211 FDPVAHDLEASFRLTRFADLKGRSCKVPQDVLGKLVESLQQDYSQADQDQFMHVAIPRIG 390
FDPV++ L+ F LT+ +KG CKVP++VL +L+++ + D + D+ +
Sbjct: 11 FDPVSNGLDEDFVLTKLTGMKGCGCKVPRNVLLQLLQTFKTDLV-INNDE--------VD 61
Query: 391 IGLDCSVTPLRHGGLCLVQTTDFFYPLVDDPYMMGKIACANVLSDLYAMGVTECDNMLML 570
IGLD V PLRH GL LVQTTDFFYPL+DDPY+MG++ CANVLSDLYAMGV+ECDNMLML
Sbjct: 62 IGLDSCVIPLRHPGLRLVQTTDFFYPLIDDPYIMGRVTCANVLSDLYAMGVSECDNMLML 121
Query: 571 LGVSTKMTEKERDVVIPLIMRGFKDSALEAGTSVTGGQTVINPWCTIGGVATTICXPNEY 750
L V+ + EK+RD+V+PL ++GFKD+A EAGT + GGQTV PW +GGVAT++ +E
Sbjct: 122 LAVAIDLNEKQRDIVVPLFIQGFKDAADEAGTKIRGGQTVRCPWLLLGGVATSVAHESEI 181
Query: 751 IVPDNAXMGDVLVLTKPLGTQ 813
I D A GDVL+LTKP+G Q
Sbjct: 182 IKVDQAVPGDVLILTKPIGGQ 202
>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
protein ZK154.5 protein.
Length = 1105
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = -2
Query: 326 KDSTSFP--RTS*GTLQLLPFRSANRVSRKLASKSCATGS---NGRRKAIELG 183
KDST + R + GT+ L ++ R+ +++ S C+T S +GR K+ E G
Sbjct: 677 KDSTIYQLKRFTVGTISLTEQKTVERIKQEIPSSECSTASLDGDGREKSFETG 729
>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
protein T05A10.1f protein.
Length = 2048
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 677 PVTDVPASKAESLNPRIIRGITTSRS-FSVIFVETPNNMSILSHSVTPIAYRSLRTLAH 504
P T +PA + +L P +IR + +++ + TP+ V+ ++R L LAH
Sbjct: 1769 PTTSIPAPQPVALTPEMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSHRDLSFLAH 1827
>U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical
protein C13B9.4c protein.
Length = 541
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 340 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 221
N LA + Q F E ++VL +PL ++++ NL P R P
Sbjct: 28 NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67
>U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical
protein C13B9.4b protein.
Length = 536
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 340 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 221
N LA + Q F E ++VL +PL ++++ NL P R P
Sbjct: 28 NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67
>U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical
protein C13B9.4a protein.
Length = 546
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 340 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 221
N LA + Q F E ++VL +PL ++++ NL P R P
Sbjct: 28 NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67
>AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1C protein.
Length = 546
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 340 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 221
N LA + Q F E ++VL +PL ++++ NL P R P
Sbjct: 28 NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67
>AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1B protein.
Length = 541
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 340 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 221
N LA + Q F E ++VL +PL ++++ NL P R P
Sbjct: 28 NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67
>AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1A protein.
Length = 536
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 340 NSLAVKTQQVFREHLEVLCNFFPLDQQIVSAENLPPNRAP 221
N LA + Q F E ++VL +PL ++++ NL P R P
Sbjct: 28 NVLASTSVQAFNEAMDVLEESYPLCKKMLDHNNLFPERDP 67
>U46669-3|AAA85744.2| 737|Caenorhabditis elegans Regulator of g
protein signalingprotein 6 protein.
Length = 737
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -2
Query: 791 KTNTSPIXALSGTMYSLGWQIVVATPPIVHQGLMTVCPPVTDVPASKAESLNPR 630
K+ TS SGT S + A PP++H + + P T + NPR
Sbjct: 675 KSPTSTTITTSGTTTSATSSVATAPPPVLH-AMRSASTPATSSQLTGGGGGNPR 727
>AF106573-7|AAC78158.1| 838|Caenorhabditis elegans Hypothetical
protein F52D2.6 protein.
Length = 838
Score = 27.9 bits (59), Expect = 9.1
Identities = 24/68 (35%), Positives = 25/68 (36%)
Frame = +1
Query: 253 TRFADLKGRSCKVPQDVLGKLVESLQQDYSQADQDQFMHVAIPRIGIGLDCSVTPLRHGG 432
TR L G C D KL ESL A D F P DC TP R G
Sbjct: 554 TRPEALIGERCLTSSDKSSKLNESLDVVPKLAALDSFHSTGTPVFTDCNDCP-TPKRSGF 612
Query: 433 LCLVQTTD 456
C V T +
Sbjct: 613 NCEVWTAE 620
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,411,527
Number of Sequences: 27780
Number of extensions: 424674
Number of successful extensions: 1031
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -