Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M17
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 629 IIRGITTSRSFSVIFVETPNNMSILS 552
           +  G+T +R  S++  + PN ++IL+
Sbjct: 635 VASGLTKARGHSLLVADRPNFVTILA 660


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 457 FFYPLVDDPYMMGKIACANVLSDLYAMGVTECDNM 561
           FF P++   Y+ G+I+C  + S    +  TE +N+
Sbjct: 207 FFLPMLVMLYVYGRISCV-IASRHRNLEATESENV 240


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 313 VFREHLEVLCNFFPLDQQ 260
           +FR   ++   FFP D+Q
Sbjct: 126 IFRSSCDIDVEFFPFDEQ 143


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 313 VFREHLEVLCNFFPLDQQ 260
           +F+   E+   +FP DQQ
Sbjct: 140 IFKSSCEIDVRYFPFDQQ 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,388
Number of Sequences: 438
Number of extensions: 4966
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)