Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M16
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)                  31   0.84 
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_2571| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   7.9  
SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)                    28   7.9  

>SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)
          Length = 1803

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 336  LQYAVPSLSLQRSVLARVTRLGRHAQPQSWITSA 437
            L++ +P  SL     AR+ RL  H   QSW+ SA
Sbjct: 1172 LRFQLPITSLSHPRGARIRRLATHPTEQSWVVSA 1205


>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 371 VSARQSHATRPARPATVVDNLGQSPLPV 454
           +S ++S A RPA+PA    N G    PV
Sbjct: 396 ISCKRSSANRPAKPAVTAANTGNMDTPV 423


>SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 367 CSDREGTAYCKTRYRYRSINNDSTCSLIN 281
           C D EG  YC     YR +++D +C +++
Sbjct: 591 CKDYEGGYYCTCNPGYRLMDDDKSCEVLS 619


>SB_2571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +3

Query: 183 SYEDSSAKALNNKFAARCSKYVSLRNLYSSIIALINEQVLSLLILRYRYRV 335
           SY+  ++   NN+F  + +K +S R+++S    L  E+ ++ +I+    R+
Sbjct: 547 SYQVKASSIANNQFHVKFTKRLSRRSIFSLEHPLTGEKAIAKIIITQTSRI 597


>SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 651

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 367 CSDREGTAYCKTRYRYRSINNDSTCSLINAII 272
           C++  G+ YC  R+ Y    +++TC+ IN  +
Sbjct: 77  CTNTNGSFYCSCRHGYALQADNTTCADINECV 108


>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
          Length = 434

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 376 TDRCSDREGTAYCKTRYRYRSINNDSTC 293
           T+RC  REG  +CKT +  R     S C
Sbjct: 40  TERCFSREGKLFCKTDFYRRYGTKCSGC 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,112,198
Number of Sequences: 59808
Number of extensions: 312543
Number of successful extensions: 1031
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)