Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M15
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 36 0.003
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa... 28 1.0
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 27 1.8
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.2
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 26 3.2
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo... 26 4.2
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 26 4.2
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 5.5
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.3
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 9.6
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 9.6
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 163 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 300
VY+PD Y+P+ V YYPQQP P+F ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542
>SPBC25H2.07 |tif11||translation initiation factor
eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 27.9 bits (59), Expect = 1.0
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = -2
Query: 384 LWYFRSGRRFGSLSNRYQSG*VQFDLFSGVSQLGRLSGAEDRVLWL 247
L Y G+ + ++ +G ++ F GV +LG + G + +W+
Sbjct: 26 LTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWI 71
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = -2
Query: 120 HERGH--ATAHSSGVVVRIIVTA 58
H RGH ATA + G V+R+I T+
Sbjct: 176 HPRGHLIATASAKGTVIRVITTS 198
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 128 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 268
S H + + +++ +P+P YR + TLSN++T S
Sbjct: 45 SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 94 VGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADT 204
+G GM+AF++ P P+ +VY RR T ++
Sbjct: 9 LGTGMSAFIFHYPFLKALPNHFEVYAAWERRATSTES 45
>SPCC1795.03 |gms1||UDP-galactose transporter
Gms1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 109 AAFMYRQPEAAQAPSTGQVYIP 174
A F+Y +PE+ +PS G YIP
Sbjct: 318 ATFLYTKPESKPSPSRG-TYIP 338
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 129 LAVHERGHATAHSSGVVVRIIVTAHDQASSVTXA 28
L H+R + H+S +V I+V +HD AS+ A
Sbjct: 254 LGGHKRLSSRNHNSQPLVCILVGSHDHASAAVAA 287
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +1
Query: 220 QENEVYYPQQPENPIFSPTQATELADPTE 306
+ N YPQ + P+ P A DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +1
Query: 202 TSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKVELYSTT 330
TS+ PQ ++ +Y + + S T+ + + T K++ S T
Sbjct: 720 TSFNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 140 HRRLQRARCTYLIVAARPLPIPATYRNKKTK 232
H R++ Y+ ++A P P+ R+K +K
Sbjct: 469 HHRIELGLGDYISISASSFPFPSVIRSKYSK 499
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 24.6 bits (51), Expect = 9.6
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 71 ILTTTPELWAVAWPRSCTASPKPHRRL--QRARCTY 172
+L TPELW +A P P L Q+ R TY
Sbjct: 68 LLQPTPELWTLALPHRTQIVYTPDIALIHQKLRITY 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,931,676
Number of Sequences: 5004
Number of extensions: 37454
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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