Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M15
(547 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical pr... 31 0.41
Z74046-1|CAA98556.2| 178|Caenorhabditis elegans Hypothetical pr... 29 2.9
U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical p... 29 2.9
AF003130-1|AAB54124.2| 423|Caenorhabditis elegans Hypothetical ... 29 2.9
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 2.9
U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical pr... 28 3.8
L13200-7|AAA28189.1| 206|Caenorhabditis elegans Prion-like-(q/n... 28 3.8
Z93785-1|CAB07858.1| 495|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical p... 28 5.0
Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical pr... 28 5.0
U70852-5|AAK29817.2| 322|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 27 8.8
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family... 27 8.8
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family... 27 8.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 8.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 8.8
>Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical
protein E01G4.4 protein.
Length = 534
Score = 31.5 bits (68), Expect = 0.41
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 76 YYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE 255
Y NP+A G + +Q + P Y P R++Q +Y P+Q+ + Y QQ +
Sbjct: 27 YQNPQAGYG----YNNQQQQQQGRPQQYAGYPPQRQQQQYNMNAYAPRQQQQQQYQQQQQ 82
Query: 256 N 258
N
Sbjct: 83 N 83
>Z74046-1|CAA98556.2| 178|Caenorhabditis elegans Hypothetical
protein ZC116.1 protein.
Length = 178
Score = 28.7 bits (61), Expect = 2.9
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +1
Query: 64 YYNPYYN--PRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVY 237
YY PYY P A G + +Q +A A ++ Q A + QQ+ + Y
Sbjct: 25 YYTPYYYYYPTAAVAGTTG-VAQQTQAGGASQQAYAQQQPQQNQQYAQGT---QQQQQQY 80
Query: 238 YPQQPE 255
YPQQ +
Sbjct: 81 YPQQTQ 86
>U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical
protein B0207.1 protein.
Length = 564
Score = 28.7 bits (61), Expect = 2.9
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = +1
Query: 70 NPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYY--P 243
NP NP + G+ P Q P V P R + + V Q + V P
Sbjct: 63 NPVQNPNKLSTGLPPMTMMLPPTVQEPLPTPVKTPPLPRPP-GNLNPVQQPQIPVQRTPP 121
Query: 244 QQPENPIFSPTQATELA 294
Q P P+ P Q T++A
Sbjct: 122 QCPPPPVPHPPQITQMA 138
>AF003130-1|AAB54124.2| 423|Caenorhabditis elegans Hypothetical
protein F55A12.6 protein.
Length = 423
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 19 YGSGXSNR--GGLVMSRYYNPYYN-PRAVGGGMAAFMYRQPEA 138
YG+G N+ GG + YYN YYN GG + Y Q ++
Sbjct: 152 YGNGYYNQYNGGYGGNGYYNQYYNGNNYYGGNRGYYNYNQGQS 194
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 208 YVPQQENEVYYPQQPENPIFSPTQATELADPTEKVE 315
YVPQ+ P PE +P+Q + +PT +E
Sbjct: 1812 YVPQETQAPIAPSNPEPVQPNPSQTVSIPEPTGNIE 1847
>U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical
protein C23H3.9d protein.
Length = 432
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 80 TTPELWAVAWPRSCTASPKPHRRLQRARCTYLIVAARPLPIPATYRNK 223
TTPE + PRS + +P +RL T AA PIP K
Sbjct: 63 TTPEAPTTSEPRSHSRDARPTQRLPLTWSTVTPTAAPSQPIPTATSRK 110
>L13200-7|AAA28189.1| 206|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 96
protein.
Length = 206
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 214 PQQENEVYYPQQPENPIFSPTQATELA 294
PQQ+ Y PQQP +PI A +A
Sbjct: 6 PQQQQPGYQPQQPSHPIVGAGAAPTMA 32
>Z93785-1|CAB07858.1| 495|Caenorhabditis elegans Hypothetical
protein W09D10.1 protein.
Length = 495
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 43 GGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPS 153
G V + N N +++GGG A F AA APS
Sbjct: 231 GSFVSANSQNAQQNAQSLGGGFADFSSAPTTAAAAPS 267
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 130 PEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPT 276
P++ QAPS +Q A T +PQ + P QP + I PT
Sbjct: 121 PQSVQAPSATPAGPLQAMQQAPAPTPGIPQMNQGAHLPPQP-HQIHQPT 168
>Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 65 TIILTTTPELWAVAWPRSCTASPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTK---S 235
T+ +TT + PR+ ++S A TY V L +P T ++ K + S
Sbjct: 52 TVTSSTTSPITPSTPPRASSSSSMFAASSPSAAATYSTVTTAALVVPTTLQSPKREFVCS 111
Query: 236 ITLSNQRTRSSAPLKRP 286
+ N + + + LKRP
Sbjct: 112 TPIKNGTSDAKSHLKRP 128
>Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 65 TIILTTTPELWAVAWPRSCTASPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTK---S 235
T+ +TT + PR+ ++S A TY V L +P T ++ K + S
Sbjct: 52 TVTSSTTSPITPSTPPRASSSSSMFAASSPSAAATYSTVTTAALVVPTTLQSPKREFVCS 111
Query: 236 ITLSNQRTRSSAPLKRP 286
+ N + + + LKRP
Sbjct: 112 TPIKNGTSDAKSHLKRP 128
>U70852-5|AAK29817.2| 322|Caenorhabditis elegans Hypothetical
protein F45E4.6 protein.
Length = 322
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 65 TIILTTTPELWAVAWPRSCTASPK 136
T+I+ T E WA+ WP S + K
Sbjct: 26 TLIVRDTQEYWALGWPTSISCDSK 49
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 27.1 bits (57), Expect = 8.8
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +1
Query: 46 GLVMSRYYNPYY-NPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQ 222
G++MS + P + ++ G M + RQP+ S + P+ R L +
Sbjct: 1037 GIIMSAQFFPQFVGAKSAAGQMFNLINRQPQTGDLKSGTK---PEIRGNILFENV----- 1088
Query: 223 ENEVYYPQQPENPIFSPTQATELADPT 303
+ YPQ+P P+ Q T L T
Sbjct: 1089 --KFSYPQRPHQPVMKQLQWTALRGQT 1113
>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
protein 5, isoformb protein.
Length = 1306
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 177 SSPPDPCRYQLRTATRKRSLLPSATREP 260
+ PP+P YQL R+ + +P+ EP
Sbjct: 63 ADPPNPSTYQLNVEAREVNTVPTRRSEP 90
>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
protein 5, isoforma protein.
Length = 1544
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 177 SSPPDPCRYQLRTATRKRSLLPSATREP 260
+ PP+P YQL R+ + +P+ EP
Sbjct: 63 ADPPNPSTYQLNVEAREVNTVPTRRSEP 90
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +2
Query: 77 TTTPELWAVAWPRSCTASPKPHRRLQRARCTYLIVAARPLPI--PAT 211
TT PE + P SC + + RA C +I RP+ PAT
Sbjct: 12914 TTAPEDYVKPSPSSCNCQCSEGKAVLRATCEMVIDTNRPIATLPPAT 12960
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +2
Query: 77 TTTPELWAVAWPRSCTASPKPHRRLQRARCTYLIVAARPLPI--PAT 211
TT PE + P SC + + RA C +I RP+ PAT
Sbjct: 12914 TTAPEDYVKPSPSSCNCQCSEGKAVLRATCEMVIDTNRPIATLPPAT 12960
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,980,151
Number of Sequences: 27780
Number of extensions: 228085
Number of successful extensions: 593
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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