Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M13
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    86   6e-18
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    43   4e-05
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   2.2  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   8.8  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
 Frame = +3

Query: 9   ELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGA 188
           E  +  K ++  VPGAFTP CS + +PGY+ N  +  + G++ I  V+VND +V  AW  
Sbjct: 23  EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQFAAKGISGIYVVAVNDVFVTKAWKK 81

Query: 189 QHN--TKGKVRMLADPSGNFIKALDLGTNLPP-LGGFRSKRFSMVIVDSKVQDLNVEPDG 359
             +   +  V  +AD +G F KA D G +    LG  RSKR++ V+ + KV  + +E + 
Sbjct: 82  SFDGGEQSGVHFVADWNGEFTKAFDAGFDASGLLGPLRSKRYAAVVENGKVVKVFIENEV 141

Query: 360 TGLSCSLADKI 392
           T +  S ADK+
Sbjct: 142 TDVDISSADKV 152


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 27/82 (32%), Positives = 44/82 (53%)
 Frame = +3

Query: 9   ELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGA 188
           ++TA K +V+FA P A TPGC+K    G+  N  K+++    E++ +S +      A+  
Sbjct: 69  DITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKIQASDY-EVLGLSFDTSKAQKAFKD 126

Query: 189 QHNTKGKVRMLADPSGNFIKAL 254
           + N      +L+DP G  IK L
Sbjct: 127 KQNF--PYHLLSDPKGELIKKL 146


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 131 NSIRFQFICVLYVSRQMCFRTSRG 60
           NSI+  F+C++Y+S+ M ++   G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 265 PICRRSEVSAPKGSPWSSL 321
           P+   S+ +APK SPW SL
Sbjct: 612 PVTSGSQTTAPKPSPWKSL 630


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +3

Query: 90  GYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQH-----NTKGKVRMLADPS 233
           GY+ +++ L  +G  + +   V++P   A W  +H     N +  + +L D S
Sbjct: 329 GYLHSSELLYPEGTEQQIISLVDEPNQNALWIIEHEHSQDNNRSNIELLKDGS 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,280
Number of Sequences: 5004
Number of extensions: 64400
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)