Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M13
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 118 7e-27
06_03_0811 + 24830496-24831194 113 2e-25
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 107 1e-23
02_01_0691 - 5167260-5167937 106 2e-23
11_03_0128 - 10437407-10438049,10438097-10438272 33 0.32
09_06_0228 + 21706118-21706252,21706327-21706406,21706742-217068... 33 0.32
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 31 0.99
02_05_0541 - 29866396-29866881 31 0.99
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 31 1.3
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 3.0
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 29 3.0
06_01_0671 - 4899611-4899829,4900870-4901448 29 3.0
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518 29 4.0
01_06_0928 + 33085403-33089224 29 5.3
09_06_0224 + 21661317-21661386,21663735-21663865,21663904-216639... 28 9.2
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 118 bits (283), Expect = 7e-27
Identities = 58/117 (49%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Frame = +3
Query: 12 LTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQ 191
L AGKKVVLF VPGAFTP CS H+PG++ A++LK+ GV +I+ VSVNDP+VM AW
Sbjct: 32 LAAGKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKS 91
Query: 192 HNTKGKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEPDG 359
+ V+ LAD G + KAL L +L G G RS+RF+++ + KV N+E G
Sbjct: 92 YPENKHVKFLADGLGTYTKALGLELDLSEKGLGIRSRRFALLADNLKVTVANIEEGG 148
>06_03_0811 + 24830496-24831194
Length = 232
Score = 113 bits (271), Expect = 2e-25
Identities = 57/132 (43%), Positives = 85/132 (64%), Gaps = 3/132 (2%)
Frame = +3
Query: 9 ELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGA 188
+LTAGKKVVLFAVPGAFTP C++ H+PG+V A +L++ GV + CVSVND +VM AW
Sbjct: 99 DLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKE 158
Query: 189 QHNTKGKVRMLADPSGNFIKALDLGTNL--PPLG-GFRSKRFSMVIVDSKVQDLNVEPDG 359
+V +L+D +G +A+ + +L P G G RS+R++++ D V+ LN+E G
Sbjct: 159 SLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGG 218
Query: 360 TGLSCSLADKIK 395
+ S + +K
Sbjct: 219 AFTTSSAEEMLK 230
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 107 bits (256), Expect = 1e-23
Identities = 51/111 (45%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +3
Query: 21 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 200
GKKVV+F +PGA+T CS+ H+P Y N DKLK+ GV ++CVSVNDPY + W +
Sbjct: 70 GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQA 129
Query: 201 KGKVRMLADPSGNFIKALDLGTNL-PPLGGFRSKRFSMVIVDSKVQDLNVE 350
K + D G+F K+LDL +L L G RS R+S + D K++ NVE
Sbjct: 130 KDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAFNVE 180
>02_01_0691 - 5167260-5167937
Length = 225
Score = 106 bits (255), Expect = 2e-23
Identities = 58/133 (43%), Positives = 83/133 (62%), Gaps = 4/133 (3%)
Frame = +3
Query: 9 ELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGA 188
ELTAG+K VLFAVPGAFTP CS+ HLPG+++ A +L + GV I CVSVND +VM AW
Sbjct: 91 ELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKE 150
Query: 189 QHNT-KGKVRMLADPSGNFIKALDLGTNL--PPLG-GFRSKRFSMVIVDSKVQDLNVEPD 356
V +L+D + +AL + +L P+G G RS+R++++ D V+ LN+E
Sbjct: 151 SLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEG 210
Query: 357 GTGLSCSLADKIK 395
G + S + +K
Sbjct: 211 GAFTTSSAEEMLK 223
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 32.7 bits (71), Expect = 0.32
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 175 RLGELST-TPKERCVC*PIPAATSSRLWTWAPICRRSEVSAPKGSPWSSLTA 327
R G S+ P RC P P A+S L +W C RS +S+P S W TA
Sbjct: 219 RCGSASSWCPSSRC---PSPTASSESLGSWGSGC-RSHLSSPTCSSWWRTTA 266
>09_06_0228 +
21706118-21706252,21706327-21706406,21706742-21706866,
21706960-21707084,21707162-21707380,21707458-21707580,
21707661-21707761,21707847-21707899,21707972-21708174
Length = 387
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -3
Query: 365 ASAIGLHIQILNLAVNDDHGEPFGAETSERRQIGAQVQSLDEVAAGIG*HTH 210
A +G + I+ AV D+ G PFG ++S R +G SL G+ TH
Sbjct: 113 AGNLGNLLLIVVPAVCDEDGNPFGKDSSRCRSLGLSYSSLSMALGGLYIWTH 164
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 31.1 bits (67), Expect = 0.99
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +3
Query: 30 VVLFAVPGAFTPGCSK--THLPGYVQNADKLKSDGVAEIVC--VSVNDPYVMAAWGAQHN 197
V+LF+ PG FTP C+ + GY + DK + + I C V + ++ +
Sbjct: 68 VILFSHPGDFTPVCTTELAAMAGYAKEFDK-RGVKLLGISCDDVQSHKDWIKDIEAYKPG 126
Query: 198 TKGKVRMLADPSGNFIKALDL 260
+ ++ADPS IK L++
Sbjct: 127 NRVTYPIMADPSREAIKQLNM 147
>02_05_0541 - 29866396-29866881
Length = 161
Score = 31.1 bits (67), Expect = 0.99
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 190 STTPKERCVC*PIPAATSSRLWTWAPICRRSEVSA 294
S TP RC+ PIP S+ L T A RR V+A
Sbjct: 12 SPTPSSRCLLLPIPVVVSTFLQTLAIALRRCSVTA 46
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -2
Query: 384 RRENKTGQCHRAPHSDLEPCCQR*PWRTFWSGNLRAAADWCPGPEP 247
RRE +T H PHSDL P R P RT + + R P P P
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRTSAAASGRLQEKQAPPPLP 229
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 276 PLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 392
PL G S F+ +I S +Q +V+ DGT SC + D I
Sbjct: 456 PLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 42 AVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW-GAQHNT 200
A+ G P C H+ + K +S V V + YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDS 193
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 21 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVND 161
G+ VV++ P TPGC+K + + +K K G AE++ +S +D
Sbjct: 144 GRPVVVYFYPADETPGCTK-QACAFRDSYEKFKKAG-AEVIGISGDD 188
>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
Length = 524
Score = 29.1 bits (62), Expect = 4.0
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Frame = +3
Query: 6 CELTAG------KKVVLFAVP---GAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVN 158
CELT +K + F P GAF K P Y + D L GV E++ SV+
Sbjct: 155 CELTGDIRISPKEKTMFFVNPSSAGAFDGNGEKKIRP-YARKDDFLLP-GVVEVIIKSVS 212
Query: 159 DPYVMAAWGAQHNTKGKVRMLADPSGNF 242
P + A HN V +A + NF
Sbjct: 213 SPAIAPACTRTHNVPAVVFSVAGYTDNF 240
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = -1
Query: 280 SGGRLVPRSRALMKLPLGSASIRTFPLVLC*APQAAITYGSLTDTHTISATPSD 119
SG LVP S L +L L S SI L LC ++ SLT+ T++ PS+
Sbjct: 931 SGLPLVPPS-GLCELYLSSCSITDGALALCIGGLTSLRELSLTNIMTLTTLPSE 983
>09_06_0224 +
21661317-21661386,21663735-21663865,21663904-21663983,
21664248-21664372,21664745-21664830,21664932-21665168,
21665261-21665380,21665502-21665602,21665655-21665758,
21665851-21666047
Length = 416
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 326 AVNDDHGEPFGAETSERRQIGAQVQSLDEVAAGIG*HTHLSFGVVLSSPSRHH 168
AV D+ G PFG + S R G SL G+ TH ++ ++ + +H
Sbjct: 135 AVCDEDGNPFGKDRSLCRSRGLSYSSLSMALGGLFIWTH-TYSLMQKAGKMYH 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,657,827
Number of Sequences: 37544
Number of extensions: 466284
Number of successful extensions: 1157
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -