Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M13
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)         105   4e-23
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   7e-16
SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)                       30   2.3  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)         29   5.4  
SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)                       28   7.1  
SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)           28   9.4  

>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score =  105 bits (252), Expect = 4e-23
 Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 1/126 (0%)
 Frame = +3

Query: 12  LTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQ 191
           L AGK VVLFA+PGAFTP CS THLP Y + A   K+ GV +I+C+SVND +VM +W A 
Sbjct: 31  LFAGKTVVLFALPGAFTPTCSSTHLPRYNELAPVFKAQGVDDIICLSVNDTFVMNSWAAD 90

Query: 192 HNTKGKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEPDGTGL 368
              +  +  + D +G F + + +  +   LG G RS R+SM++ D  ++ + +EPD  G 
Sbjct: 91  QKAE-NITFIPDGNGEFSEGMGMLVDKSDLGFGKRSWRYSMLVKDGVIEKMFIEPDVPGD 149

Query: 369 SCSLAD 386
              ++D
Sbjct: 150 PFKVSD 155


>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
 Frame = +3

Query: 114 LKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPP-LGGF 290
           +KS GV  + C++VNDP+VM+AWG  +  +GK             A+DL  +  P LG  
Sbjct: 53  IKSKGVDVVACIAVNDPFVMSAWGEANGCQGK-------------AVDLELDATPFLGNI 99

Query: 291 RSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 392
           RSKR++M++ D  V+ L+VEPDGTGL+CSL++ I
Sbjct: 100 RSKRYAMLVEDGVVKQLHVEPDGTGLTCSLSNSI 133


>SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)
          Length = 366

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 54  AFTPGCSKTHLPGYVQNADKLKSDGVAE-IVCVSVN 158
           A  PG S+  L  + + A  +KSD +A+ IVCV +N
Sbjct: 84  ASIPGFSQEQLQAWARRAKAVKSDSLADAIVCVQLN 119


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
 Frame = -3

Query: 479 VTNEVKIALISFLCYLILQCDITHCLLHFDLIGERTRQASAIGLHIQI-LNLAVND---D 312
           +T E++ ALI F         +  C L   L     R  + + + +   L+++V D    
Sbjct: 166 LTREIQRALIMFPSVRYPSVRVFICRLSVRL---SVRLTACLSVRVSFCLSISVFDCMTK 222

Query: 311 HGEPFGAETSERRQIGAQVQSLD--EVAAGIG*HTHLSFGVVL-SSPSRHHIRVINRHAH 141
            G  +GAET+     G  +  L+   V   I       F ++L SSPS++H  ++    H
Sbjct: 223 EGPDYGAETTGYAVRGEGLSCLEGPTVIVIIIFWLRAYFSIILTSSPSKYHRHLVPSPFH 282

Query: 140 YFSNSIRFQFICVLYVS 90
           + ++   F +I ++ +S
Sbjct: 283 HDNSLHHFPYISIINIS 299


>SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 243 IKALDLGTNLPPLGGFRSKRFSMVIVDSKVQDL 341
           ++A+DL TN+  +G  R+  F +  VD +V+D+
Sbjct: 80  VRAVDLSTNMIEIGKQRAAEFEIDKVDFEVEDI 112


>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
          Length = 969

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 189  QHNTKGKVRMLADPSGNFIKALDLGTNLPPLGGFRSKRFSMVIVDSKVQ 335
            QHNT+ K+ ++A+ +  +    + G +   L     KR+S  +VDSK +
Sbjct: 908  QHNTRVKLPVVAERTAGYDDDEESGEDEDVLSRNAIKRYSQQLVDSKTK 956


>SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)
          Length = 178

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 120 ISVYLRSVRIPANVF*NIPG*RRPAPQII 34
           +SVY  S  +P  VF  +PG R P P ++
Sbjct: 24  LSVYKASELLPRTVFIRVPGGRCPCPHLL 52


>SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)
          Length = 597

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 163 GSLTDTHTISATPSDFSLSAFCTYPGKCVLEHPGVKAPGTAN 38
           GSL +  TI+++  +F+++A   +PG   +    V  P T N
Sbjct: 199 GSLVEIATINSSSLEFNVNASLRWPGGAAMTPRDVSQPVTKN 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,450,571
Number of Sequences: 59808
Number of extensions: 506707
Number of successful extensions: 1041
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)