Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M12
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 298 6e-82
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 107 2e-24
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 85 1e-17
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 76 6e-15
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 72 8e-14
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 61 2e-10
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 40 4e-04
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 39 7e-04
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 38 0.001
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 33 0.060
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.24
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 30 0.32
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 29 0.56
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 29 0.74
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 29 0.97
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 28 1.7
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 3.0
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.2
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 6.9
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 6.9
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 6.9
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 9.1
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 298 bits (731), Expect = 6e-82
Identities = 137/193 (70%), Positives = 171/193 (88%), Gaps = 1/193 (0%)
Frame = +1
Query: 196 YXPPIPTRVGKKXRKAK-GPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE 372
Y PP+PTR G++ +KA+ GPDA+ KLP V P TRCRL+LLK++RI D+LLMEEE+++NQE
Sbjct: 31 YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQE 90
Query: 373 RLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ 552
RLKPQ+E+ +EER++VD++RGTPMSVG LEEIIDD+HAIVST+ G E+YVSI+SFVDKD
Sbjct: 91 RLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDM 149
Query: 553 LEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLXTXIQEIKESVEL 732
LEPGCSVLL+HK ++VG+L DDTDPM++VMKL+KAP E+YADIGGL + IQEIKE+VEL
Sbjct: 150 LEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVEL 209
Query: 733 PLTHPEYYEXMGI 771
PLTHPE YE MGI
Sbjct: 210 PLTHPELYEEMGI 222
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 107 bits (257), Expect = 2e-24
Identities = 55/152 (36%), Positives = 92/152 (60%)
Frame = +1
Query: 316 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVS 495
LER + L ++E FI+ E K + ++ + +V ++ P+ +G E ID N AIV
Sbjct: 16 LERQLEMLDLQEGFIK--EDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVG 73
Query: 496 TSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETY 675
++ GS + V ILS +D++ L+P SV L +A+V +L + D +S+++ ++ P +Y
Sbjct: 74 STTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSY 133
Query: 676 ADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
AD+GGL QE++E+VELPLT + Y +GI
Sbjct: 134 ADVGGLDVQKQEVREAVELPLTQGDLYRQIGI 165
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 85.0 bits (201), Expect = 1e-17
Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 4/155 (2%)
Frame = +1
Query: 319 ERIKDYLLMEEEFIRNQERLKPQEEKIEEE----RSKVDDLRGTPMSVGNLEEIIDDNHA 486
++I+D L + +N RL+ Q + R ++ L+ VG + + + N
Sbjct: 22 QKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKV 81
Query: 487 IVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQ 666
+V ++ V I +D +++P V L + + ++ +L + DP+VS+M +EK P
Sbjct: 82 LVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPD 141
Query: 667 ETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
TY +GGL I+EIKE +ELP+ HPE +E +GI
Sbjct: 142 STYEMVGGLEKQIKEIKEVIELPVKHPELFESLGI 176
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 75.8 bits (178), Expect = 6e-15
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Frame = +1
Query: 316 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDD----LRGTPMSVGNLEEIIDDNH 483
LE+ K YLL E+ + L+ + ++ K +D L+ +G + + +D
Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67
Query: 484 AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAP 663
IV S G + V + VD+ L G V L+ ++ +L + DP+V M +E
Sbjct: 68 FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPG 127
Query: 664 QETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
++A +GGL I+E++E +ELPL +PE + +GI
Sbjct: 128 DISFAGVGGLNEQIRELREVIELPLKNPELFLRVGI 163
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 72.1 bits (169), Expect = 8e-14
Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 21/168 (12%)
Frame = +1
Query: 331 DYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID------------ 474
D +M+ EF R EKI+E + K+ + + P VGN+ EI+D
Sbjct: 49 DIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESA 108
Query: 475 ---------DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTD 627
A++ TS ++ ++ V+ ++L PG + +N + ++ L + D
Sbjct: 109 NQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYD 168
Query: 628 PMVSVMKLEKAPQETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
V M++++ P E Y+DIGGL I+E+ E++ LP+ + + +G+
Sbjct: 169 SRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGV 216
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/104 (30%), Positives = 55/104 (52%)
Frame = +1
Query: 460 EEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVS 639
E+ + N +++ ++ VS+ V +E G V + +A+ L DP V+
Sbjct: 107 EQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVT 166
Query: 640 VMKLEKAPQETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
+M++E+ P TY D+GG I+ ++E VELPL PE + +GI
Sbjct: 167 MMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGI 210
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 655 KAPQETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
++P ++DIGG Q++KESVE PLTH E + +G+
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGV 579
Score = 34.7 bits (76), Expect = 0.015
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 670 TYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
T++ IGGL I +I++ VELP +PE ++ I
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNI 310
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 39.1 bits (87), Expect = 7e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 673 YADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
Y DIGG + +I+E VELPL HP+ ++ +GI
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGI 255
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 676 ADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
+DIGGL I E+ E V +P+ HPE Y+ GI
Sbjct: 174 SDIGGLDDCINELLELVAMPIKHPEVYQYTGI 205
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 32.7 bits (71), Expect = 0.060
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 670 TYADIGGLXTXIQEIKESVELPLTHPEYYE 759
++ +GGL I ++KE V LPL +PE ++
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQ 293
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.7 bits (66), Expect = 0.24
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 298 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 477
R KLLKLE L+ ++E + + E K + E+ R + LR + + NL E+ID+
Sbjct: 664 RTKLLKLEESNKSLIKKQEDVDSLE--KNIQTLKEDLRKSEEALRFSKLEAKNLREVIDN 721
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 30.3 bits (65), Expect = 0.32
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 673 YADIGGLXTXIQEIKESVELPLTHPEYY 756
+ IGGL I ++KE V LPL +PE +
Sbjct: 371 FNSIGGLEDIILQLKEMVMLPLLYPEVF 398
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 29.5 bits (63), Expect = 0.56
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 283 PHTRCRLKLLKLERIKDYLLM 345
PHT RLK K +IKDYL M
Sbjct: 55 PHTAIRLKERKANKIKDYLTM 75
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 29.1 bits (62), Expect = 0.74
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 670 TYADIGGLXTXIQEIKESVELPLTHPEYYEXMG 768
++ DIGG+ + ++ + V PL +PE ++ G
Sbjct: 87 SFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHG 119
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 28.7 bits (61), Expect = 0.97
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +1
Query: 619 DTDPMVSVMKLEKA------PQETYADIGGLXTXIQEIKESVELPLTHPEYY 756
D D ++ ++ EK+ P+ + DIGGL ++++++LPL PE +
Sbjct: 630 DVDVSINRIRKEKSNTIFTVPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELF 681
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 631 MVSVMKLEKAPQETYADIGGLXTXIQEIKESVELPLTHPEYY 756
+ S + +EK P + DI GL + +KE+V LP+ P+ +
Sbjct: 115 LTSAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLF 155
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 346 EEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 444
EE+ I ++E + EE++EEE + +D P+
Sbjct: 65 EEDIIDDEESAQVDEEELEEEEEEEEDATPEPV 97
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 5.2
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 367 QERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVG-SEHYVSILSFVD 543
Q+R K EE + E+ ++ L+ S + EE+ + + V S+HY +L ++
Sbjct: 1749 QKRRKELEEFMSSEQERIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHY-RLLEYLL 1807
Query: 544 KDQLEPGCS 570
KD E CS
Sbjct: 1808 KD--ESSCS 1814
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 313 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLR---GTPMSVGNLEEIIDDNH 483
KL + D MEEEF+ + + + EK SK L+ + + G L+E++ +N
Sbjct: 166 KLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENT 225
Query: 484 AI 489
A+
Sbjct: 226 AL 227
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 268 LPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMS 447
L VT + LK + ++ DY E++ + + +K E E E S +G P S
Sbjct: 408 LSTVTYDNKDSLKNMN-SKLVDYFQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPS 466
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 304 KLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKV 420
K+L+ +R+ M E IRN K Q+E I ++ +++
Sbjct: 1190 KILRYQRLTKEYEMRAEQIRNDYAAKCQDEPIPDDEARL 1228
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 673 YADIGGLXTXIQEIKESVELPLTHPEYYEXM 765
++DI GL +KE+V P PE ++ +
Sbjct: 378 WSDIAGLDDAKNSLKEAVIYPFLRPELFQGL 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,142
Number of Sequences: 5004
Number of extensions: 45318
Number of successful extensions: 146
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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