Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M12
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 340 8e-94
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 146 2e-35
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 124 5e-29
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 86 3e-17
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 86 3e-17
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 82 5e-16
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 74 1e-13
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 70 2e-12
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 70 2e-12
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 62 4e-10
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 43 3e-04
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical pr... 32 0.52
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 31 0.69
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 31 0.69
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 31 0.69
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 31 0.69
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 31 0.69
AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical ... 31 0.69
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 31 0.69
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 31 1.2
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 31 1.2
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 31 1.2
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 31 1.2
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 31 1.2
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 31 1.2
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern... 30 2.1
Z82286-3|CAB05309.1| 781|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 29 3.7
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 29 3.7
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 29 4.8
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein. 29 4.8
AF016443-1|AAC24277.1| 366|Caenorhabditis elegans Hypothetical ... 29 4.8
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 29 4.8
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 29 4.8
AC006605-6|AAK85446.2| 495|Caenorhabditis elegans Clk-2 upstrea... 29 4.8
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical... 28 8.5
AF040655-9|AAB95038.1| 288|Caenorhabditis elegans Hypothetical ... 28 8.5
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 340 bits (835), Expect = 8e-94
Identities = 158/192 (82%), Positives = 176/192 (91%)
Frame = +1
Query: 196 YXPPIPTRVGKKXRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQER 375
Y PIP+R+GKK + +KGPDAA KLP VTPH RCRLKLLK ERIKDYLLME+EFI+NQER
Sbjct: 28 YEAPIPSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQER 87
Query: 376 LKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQL 555
LKPQEE+ EEER+KVD+LRGTPM+VG+LEEIIDD HAIVST+VGSEHYV+I+SFVDK+QL
Sbjct: 88 LKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQL 147
Query: 556 EPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLXTXIQEIKESVELP 735
EPGCSVLLNHK HAV+GVL DDTDPMVSVMKLEKAPQETYAD+GGL IQEIKE+VELP
Sbjct: 148 EPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELP 207
Query: 736 LTHPEYYEXMGI 771
LTHPEYYE MGI
Sbjct: 208 LTHPEYYEEMGI 219
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 146 bits (354), Expect = 2e-35
Identities = 88/187 (47%), Positives = 112/187 (59%), Gaps = 11/187 (5%)
Frame = +1
Query: 244 KGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERL--KPQEEKIEEERSK 417
+G + A KLP V P +C ++LLK+ RI DYL +E+EFI Q +P + E+
Sbjct: 29 RGIENANKLPTVAPKRQCLVRLLKMNRIHDYLQLEKEFITRQTSRHGRPLAVQKRREQQL 88
Query: 418 VDDLRGTPMSVGNLEEIIDDN-HAIVSTSVGS--EHYVSILSFVDKDQLEPGCSVLLN-- 582
V LRGTP ++ + E+ DD HA+V GS E YV ILS VDKD L V++
Sbjct: 89 VQSLRGTPTTLARVHELFDDEKHAVVVVE-GSRREWYVPILSIVDKDLLRLNALVMVKAG 147
Query: 583 --HKV--HAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLXTXIQEIKESVELPLTHPE 750
K A+VGVL D D K+EK P+ET+ DIGG + IQE+KESVELPLTHPE
Sbjct: 148 GMFKTVPSAIVGVLDDKIDSNAMGHKVEKTPKETFDDIGGCESQIQELKESVELPLTHPE 207
Query: 751 YYEXMGI 771
YYE MGI
Sbjct: 208 YYEEMGI 214
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 124 bits (300), Expect = 5e-29
Identities = 60/157 (38%), Positives = 101/157 (64%)
Frame = +1
Query: 301 LKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDN 480
+KL LER +L + E++I+ + R E+++ + +V ++ P+ +G E +D N
Sbjct: 38 IKLTTLERQLAHLQVMEDYIKLETR--NLEKELLHAQEEVKRIQSVPLVIGQFLEAVDQN 95
Query: 481 HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKA 660
HAIV ++ GS +YV +LS +D++ L+PGCSV L+ +A+V VL + D + +++ ++
Sbjct: 96 HAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEK 155
Query: 661 PQETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
P +Y DIGGL QE++E+VELPLTH E Y+ +GI
Sbjct: 156 PDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGI 192
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 85.8 bits (203), Expect = 3e-17
Identities = 54/187 (28%), Positives = 94/187 (50%)
Frame = +1
Query: 211 PTRVGKKXRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQE 390
P V RK DA + P+ + +++ + + + + + + Q+ L +
Sbjct: 3 PAPVFPNSRKPATLDANSDEQTLRPYFKTKVEQAE-QTVAEKSINVRRLMAQQKELNGKV 61
Query: 391 EKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCS 570
++EE S + + +G+ VG + + +D +V ++ V + + VD L G
Sbjct: 62 RLLKEEISHLHE-QGS--HVGEVCKAMDKKKVLVKNHPDGKYIVDVAASVDISTLAAGTR 118
Query: 571 VLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLXTXIQEIKESVELPLTHPE 750
V L +A+ VL DP+VS+M +EK P TY +GGL T I+EIKE +ELP+ HPE
Sbjct: 119 VALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHPE 178
Query: 751 YYEXMGI 771
++ +GI
Sbjct: 179 LFDALGI 185
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 85.8 bits (203), Expect = 3e-17
Identities = 54/187 (28%), Positives = 94/187 (50%)
Frame = +1
Query: 211 PTRVGKKXRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQE 390
P V RK DA + P+ + +++ + + + + + + Q+ L +
Sbjct: 24 PAPVFPNSRKPATLDANSDEQTLRPYFKTKVEQAE-QTVAEKSINVRRLMAQQKELNGKV 82
Query: 391 EKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCS 570
++EE S + + +G+ VG + + +D +V ++ V + + VD L G
Sbjct: 83 RLLKEEISHLHE-QGS--HVGEVCKAMDKKKVLVKNHPDGKYIVDVAASVDISTLAAGTR 139
Query: 571 VLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLXTXIQEIKESVELPLTHPE 750
V L +A+ VL DP+VS+M +EK P TY +GGL T I+EIKE +ELP+ HPE
Sbjct: 140 VALRADNYAIHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHPE 199
Query: 751 YYEXMGI 771
++ +GI
Sbjct: 200 LFDALGI 206
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 81.8 bits (193), Expect = 5e-16
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Frame = +1
Query: 361 RNQERLKPQEEKIEEE----RSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSI 528
+N RL+ Q ++ + + ++ L VG + + +D +V ++ V +
Sbjct: 50 QNVRRLQAQRNELNTKVRMLKEELQQLHEQGSYVGEVSKAMDKKKVLVKVHPEGKYVVDV 109
Query: 529 LSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLXTXIQ 708
+D + L G V L +A+ +L + DP+VS+M +EK P TY +GGL I+
Sbjct: 110 DKSIDINSLNTGARVALRADSYALHKLLPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 169
Query: 709 EIKESVELPLTHPEYYEXMGI 771
EIKE +ELP+ HPE ++ +GI
Sbjct: 170 EIKEVIELPVKHPELFDALGI 190
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 73.7 bits (173), Expect = 1e-13
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 18/162 (11%)
Frame = +1
Query: 340 LMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID--DNH---------- 483
+M E R +E+I+E ++ + P V N+ E++D DN
Sbjct: 47 IMRSEVQRINHSATTLKERIKENTERIKVNKTLPYLVSNVVELLDLEDNTEEEGANVDLD 106
Query: 484 ------AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVM 645
A++ TS + +++ ++ VD D+L+PG V +N + ++ L + D V M
Sbjct: 107 AQKTKCAVIKTSTRATYFLPVVGLVDPDELKPGDLVGVNKDSYLILEKLPAEYDSRVKAM 166
Query: 646 KLEKAPQETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
++++ P E Y+DIGG IQE+ E+V LP+TH + + +GI
Sbjct: 167 EVDERPTEQYSDIGGCDKQIQELIEAVVLPMTHKDRFVNLGI 208
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 70.1 bits (164), Expect = 2e-12
Identities = 41/153 (26%), Positives = 77/153 (50%)
Frame = +1
Query: 313 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIV 492
KL +D ++ + + + Q +K E + + L+ VG + + + + IV
Sbjct: 24 KLAECRDIEQKLKDLRKKESEMTKQFDKSEND---IKSLQSVGQIVGEVLKQLSEEKFIV 80
Query: 493 STSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQET 672
+ G + V ++K++L+ G V L+ ++ L + DP+V M E +
Sbjct: 81 KATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNIS 140
Query: 673 YADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
Y+D+GGL I+E++E VELPL +PE ++ +GI
Sbjct: 141 YSDVGGLAEQIRELREVVELPLINPELFKRVGI 173
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 70.1 bits (164), Expect = 2e-12
Identities = 41/153 (26%), Positives = 77/153 (50%)
Frame = +1
Query: 313 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIV 492
KL +D ++ + + + Q +K E + + L+ VG + + + + IV
Sbjct: 32 KLAECRDIEQKLKDLRKKESEMTKQFDKSEND---IKSLQSVGQIVGEVLKQLSEEKFIV 88
Query: 493 STSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQET 672
+ G + V ++K++L+ G V L+ ++ L + DP+V M E +
Sbjct: 89 KATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNIS 148
Query: 673 YADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
Y+D+GGL I+E++E VELPL +PE ++ +GI
Sbjct: 149 YSDVGGLAEQIRELREVVELPLINPELFKRVGI 181
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 62.1 bits (144), Expect = 4e-10
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Frame = +1
Query: 439 PMSVGNLEEII-DDNHA---IVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVG 606
P+ V +II D H +++ ++ V + V +E G V ++ + +
Sbjct: 94 PLQVARCTKIITSDKHDPRYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHL 153
Query: 607 VLGDDTDPMVSVMKLEKAPQETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
L DP V++M++E+ P TY+D+GG I++++E VE PL HPE Y +GI
Sbjct: 154 PLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGI 208
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 607 VLGDDTDPMVSVMKLEKAPQETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
V+ + DP+ + E + Y D+GG+ + +IKE VELPL HP+ ++ +G+
Sbjct: 186 VIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGV 240
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 655 KAPQETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
+ P T++DIGGL +E++E V+ P+ HPE Y G+
Sbjct: 475 ETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGM 513
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 607 VLGDDTDPMVSVMKLEKAPQETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
V+ + DP+ + E + Y D+GG+ + +IKE VELPL HP+ ++ +G+
Sbjct: 186 VIHYEGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGV 240
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 655 KAPQETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
+ P T++DIGGL +E++E V+ P+ HPE Y G+
Sbjct: 475 ETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGM 513
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 625 DPMVSVMKLEKAPQETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
DP+ + E Y D+GG+ + +IKE VELPL HP+ ++ +GI
Sbjct: 193 DPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGI 241
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 655 KAPQETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
+ P T++DIGGL +E++E V+ P+ HPE Y G+
Sbjct: 476 ETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGM 514
>Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical
protein K04G2.3 protein.
Length = 724
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 655 KAPQETYADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
+ P ++ DIGG EI+++V P HPE +E GI
Sbjct: 452 EVPNVSWNDIGGNEELKLEIQQAVIWPQKHPEAFERFGI 490
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 340 LMEEEFIRNQERLKPQEEKIEEERSKVDD 426
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 340 LMEEEFIRNQERLKPQEEKIEEERSKVDD 426
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 340 LMEEEFIRNQERLKPQEEKIEEERSKVDD 426
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 340 LMEEEFIRNQERLKPQEEKIEEERSKVDD 426
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 340 LMEEEFIRNQERLKPQEEKIEEERSKVDD 426
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical
protein Y105E8B.1b protein.
Length = 193
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 340 LMEEEFIRNQERLKPQEEKIEEERSKVDD 426
L+EEE R +ERLK EK+EE VD+
Sbjct: 3 LLEEELERAEERLKIATEKLEEATHNVDE 31
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 340 LMEEEFIRNQERLKPQEEKIEEERSKVDD 426
L+EEE R +ERLK EK+EE VD+
Sbjct: 94 LLEEELERAEERLKIATEKLEEATHNVDE 122
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 673 YADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
+ +GGL IQ +KE V P+ +PE +E I
Sbjct: 390 FDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRI 422
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 673 YADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
+ +GGL IQ +KE V P+ +PE +E I
Sbjct: 388 FDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRI 420
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 673 YADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
+ +GGL IQ +KE V P+ +PE +E I
Sbjct: 390 FDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRI 422
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 673 YADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
+ +GGL IQ +KE V P+ +PE +E I
Sbjct: 390 FDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRI 422
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 673 YADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
+ +GGL IQ +KE V P+ +PE +E I
Sbjct: 388 FDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRI 420
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 673 YADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
+ +GGL IQ +KE V P+ +PE +E I
Sbjct: 390 FDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRI 422
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 673 YADIGGLXTXIQEIKESVELPLTHPEYYEXMGI 771
+ +GGL IQ +KE V P+ +PE +E I
Sbjct: 390 FDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRI 422
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 226 KKXRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE-RLKPQEEKIE 402
++ K K +A + ++ P R R++ +K E ++ + E E ++ +E RLK +EEK++
Sbjct: 882 RREEKCKEKEAEEENEKLIPE-RKRMEAIKEE--EERVKAEREKVKKEEERLKAEEEKVK 938
Query: 403 EERSKV 420
E+ KV
Sbjct: 939 VEKEKV 944
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 217 RVGKKXRKAKGPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIR-NQERLKPQEE 393
RV + K K + LK + + E++K +E ++ +ERLK +EE
Sbjct: 915 RVKAEREKVKKEEERLKAEEEKVKVEKEKVKAEEEKVKVEKERNKEKVKAEEERLKAEEE 974
Query: 394 KIEEERSKV 420
K++ E+ KV
Sbjct: 975 KVKIEKEKV 983
>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
(werner's syndrome) relatedprotein 1 protein.
Length = 1056
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +1
Query: 223 GKKXRKAKGPDAALKLPQVTPH-TRCRLKLLKLERIKDYL-LMEEEFIRN--QERLKPQE 390
GKK + A Q T T K+L +I++Y E E + N ++ +
Sbjct: 747 GKKEKAAPSTVPGASRSQSTKSSTEIPTKILGANKIREYEPANENEQLMNLKKQEVTGLP 806
Query: 391 EKIEEERSKVDDLRGTPMSVGNLEEI 468
EKI++ RS++DD+R + + N+ E+
Sbjct: 807 EKIDQLRSRLDDIR---VGIANMHEV 829
>Z82286-3|CAB05309.1| 781|Caenorhabditis elegans Hypothetical
protein W02A2.6 protein.
Length = 781
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 304 KLLKLERIKDY-LLMEEEFIRNQERLKPQEEKIEEERSK 417
KL +L + K + LLM E F RNQE L+ +E+K RSK
Sbjct: 89 KLKELMKKKSFILLMAERFDRNQE-LQRKEDKFARLRSK 126
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 337 LLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 477
+L+EE+ R ++RLK K+E+ D+ + ++ N ++ DD
Sbjct: 65 VLVEEDLERTEDRLKTATSKLEQATKAADEADRSRRALSNQIDMDDD 111
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 337 LLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 477
+L+EE+ R ++RLK K+E+ D+ + ++ N ++ DD
Sbjct: 65 VLVEEDLERTEDRLKTATSKLEQATKAADEADRSRRALSNQIDMDDD 111
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 265 KLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQ-EEKIEEERSKVDDLR 432
KL Q+ R++ L+ ++ + M E+ + E +K Q E+K+ E R ++DDL+
Sbjct: 1447 KLTQLRNELTARIEQLESQKSNEQAQMSEK-LSQVESMKVQIEQKLYETREELDDLK 1502
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 313 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 477
KL+ K+ L E+ R Q+ K + ++ S +DD + LEE++D+
Sbjct: 207 KLDAEKEKALAEKRLEREQKLYKDLKSSSDDTSSSIDDKMNFDDEIEYLEEMLDN 261
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 313 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 477
KL+ K+ L E+ R Q+ K + ++ S +DD + LEE++D+
Sbjct: 207 KLDAEKEKALAEKRLEREQKLYKDLKSSSDDTSSSIDDKMNFDDEIEYLEEMLDN 261
>AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein.
Length = 481
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 340 LMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 444
L E+ R + R + +EEK+++E SK+ +L P+
Sbjct: 364 LFEKIEAREERRKRKEEEKLKDELSKIKELEEQPV 398
>AF016443-1|AAC24277.1| 366|Caenorhabditis elegans Hypothetical
protein C17E7.5 protein.
Length = 366
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 250 PDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEF 357
PDA L+L Q++P R++ L + ++ + + +EEF
Sbjct: 240 PDAILRLKQISPQFLQRIRSLLVMKLIELKITDEEF 275
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 625 DPMVSVMKLEKAPQETYADIGGLXTXIQEIKESVELPLTHPEYY 756
D + + +EK P + DI GL + +KE+V LP+ P+ +
Sbjct: 102 DKLSGAIVMEK-PNVKWTDIAGLEGAKEALKEAVILPIKFPQLF 144
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 388 EEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ-LEPG 564
EE +E E +DD+ + GNLE D + S+ +E ++ +V++ + L G
Sbjct: 2739 EETVETEEMIMDDMMDLYYTPGNLEIARDTFDKLEIASIMNEILYTVDQYVEETEILFRG 2798
Query: 565 CSVLLNHKVHAVVGV 609
S + + AV+ +
Sbjct: 2799 ASTAADRQAFAVMSI 2813
>AC006605-6|AAK85446.2| 495|Caenorhabditis elegans Clk-2 upstream,
human gene xe7related protein 7 protein.
Length = 495
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 340 LMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 444
L E+ R + R + +EEK+++E SK+ +L P+
Sbjct: 364 LFEKIEAREERRKRKEEEKLKDELSKIKELEEQPV 398
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 313 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDL 429
K E K+ + +EE + E K +EEK EEE K D++
Sbjct: 323 KEEEQKEEVEKKEEEEKKDEEPKKEEEKKEEEEKKEDEV 361
>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
protein Y39B6A.18 protein.
Length = 1352
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Frame = +1
Query: 292 RCRLKLLKLERIKDYLLMEEEFI-----RNQERLKPQEEKIEEERSKV 420
R + + K+++ ++ L EEE + RN+E++K +EE+++ E KV
Sbjct: 890 RVKAEREKVKKEEERLKAEEEKVKVEKERNKEKVKAEEERLKAEEEKV 937
>AF040655-9|AAB95038.1| 288|Caenorhabditis elegans Hypothetical
protein T24E12.3 protein.
Length = 288
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 349 EEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 477
++F+ NQE+L +EKI+ ++ + D + S G+ E + D
Sbjct: 236 QKFLNNQEKLNEDQEKIKNDKER-DSISQVENSDGSSESGLAD 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,267
Number of Sequences: 27780
Number of extensions: 259627
Number of successful extensions: 995
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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