Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M08
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47461| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00024)       48   6e-06
SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)       46   3e-05
SB_47779| Best HMM Match : MATH (HMM E-Value=3.8)                      40   0.002
SB_6285| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.021
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)            36   0.048
SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014)        34   0.11 
SB_15396| Best HMM Match : Plasmod_Pvs28 (HMM E-Value=1.8)             33   0.25 
SB_57055| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_23174| Best HMM Match : ABA_WDS (HMM E-Value=8.7)                   30   1.8  
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)             29   3.1  
SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)                  29   4.1  
SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)                        29   4.1  
SB_49745| Best HMM Match : A2M_comp (HMM E-Value=0)                    29   5.5  
SB_35462| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    29   5.5  
SB_4093| Best HMM Match : Lipase_GDSL (HMM E-Value=0.00026)            28   7.2  
SB_55630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   9.5  

>SB_47461| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00024)
          Length = 307

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
 Frame = +3

Query: 231 VIDLGCADGSVTDILKVYMPKNYGRLVGCDISEEMVKYANKHHGFGRTSFRVLDIEGDLT 410
           V+DLGC  G VT  +      N   ++G D  +  V+ A  +H    ++ + L    +  
Sbjct: 102 VLDLGCGTGDVTGAMAANF-SNDASIIGIDPDKYRVELAKSNHC---SNVQFLQGSAESF 157

Query: 411 ADL-KQGFDHVFSFYTLHWIRDQERAFRNIFNLLGDEGDCLLLF 539
             L ++ +D VFS + LHWI  + +AFR+I++ L   G  ++++
Sbjct: 158 PHLGEEYYDLVFSNFVLHWIPQRTKAFRDIYDSLKPGGMLVMVY 201


>SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)
          Length = 399

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
 Frame = +3

Query: 231 VIDLGCADGSVTDILKVYMPKNYGRLVGCDISEEMVKYANKHHGFGRTSFRVLDIEGDLT 410
           V+DLGC  G VT  +      N   ++G D  +  V+ A   +    ++ + L    +  
Sbjct: 150 VLDLGCGTGDVTGAMAANF-SNDASIIGIDPDKYRVELAKSKYDHC-SNVQFLQGSAESF 207

Query: 411 ADL-KQGFDHVFSFYTLHWIRDQERAFRNIFNLLGDEGDCLLLF 539
             L ++ +D VFS + LHWI  + +AFR+I++ L   G  ++++
Sbjct: 208 PHLGEEYYDLVFSNFVLHWIPQRTKAFRDIYDSLKPGGMLVMVY 251


>SB_47779| Best HMM Match : MATH (HMM E-Value=3.8)
          Length = 188

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = +3

Query: 330 EMVKYANKHHG-FGRTSFRVLDIEGDLTADLKQGFDHVFSFYTLHWIRDQERAFRNIFNL 506
           E ++ A + HG     SF V   + D   +  + +D VFS   LHWI D+E  F  IF+ 
Sbjct: 5   ERIELARESHGNLSNLSFEVGGND-DFPGEGTECYDLVFSNAVLHWIHDKEAHFAKIFSS 63

Query: 507 LGDEGDCLLLFL-GHTPI 557
           L + G   + +L G +P+
Sbjct: 64  LKNGGRVAMNYLHGSSPL 81


>SB_6285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 36.7 bits (81), Expect = 0.021
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
 Frame = +3

Query: 216 KIGDRVIDLGCADGSVTDILKVYMPKNYGRLVGCDISEEMVKYANKHHGFGRTSFRVLDI 395
           K G  + D GC  G+   +    +  N  ++ G D+S   + +A +     + +F+V  +
Sbjct: 118 KDGHSIFDNGCGCGAF--LAAFNLTYNNVKVGGLDLSNGAITFAKETFPQFKDNFKVGSV 175

Query: 396 EGDLTADLKQGFDHVFSFYTLHWIRD--QERAFRNIFNLLGDEGDCLLLFLGHTPIFDVY 569
           E DL+    + FDH  +F+T  ++    Q +A + +  ++   G    L++GH    D +
Sbjct: 176 E-DLSFVATETFDHAMTFFTFPYVSPEVQCKAVKEMVRIVKPGG---TLYVGHNLESDCF 231

Query: 570 R 572
           +
Sbjct: 232 K 232


>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score = 35.5 bits (78), Expect = 0.048
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
 Frame = +3

Query: 207 KWKKIGDRVIDLGCADGSVTDILKVYMPKNYGRLVGCDISEEMVKYANKHHGFGR----- 371
           K+ K+ DR++ L C D  + + L       Y  ++  D SE+++K   K +  G+     
Sbjct: 45  KYVKLNDRLLRLACGDSKLGENL---YDVGYRNIISVDSSEKVIKKMRKRNDSGKRDMEY 101

Query: 372 TSFRVLDIEGD-----LTADLKQGFDHVFSFYTLHWIRDQERAFRNIFNLLGDEGDCLLL 536
           T   V D++ D     +  D KQ  D+ F+  +   ++  ++ F  I  +L   G  ++ 
Sbjct: 102 TRMDVTDLKYDDESFNVVFD-KQWLDYTFTNTSEDILKKVDKTFAEIQRVLKVGGRFIVC 160

Query: 537 FLGHTPIFDVYRTLSHTEKWHSWLEHVDR 623
            L    I D  + L+H  +   WL  V +
Sbjct: 161 TLAQDHILD--KLLAHFSQ--GWLVRVHK 185


>SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014)
          Length = 267

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 228 RVIDLGCADGSVTDILKVYMPKNYGRLVGCDISEEMVKYANKHHGFGRTSF 380
           RV+DLGC  G    IL   + +  G + G D++ E V  ANK+  F   +F
Sbjct: 17  RVLDLGCGSGRDCFILSKLVGEK-GFVTGVDMTPEQVDIANKYKDFHAKAF 66


>SB_15396| Best HMM Match : Plasmod_Pvs28 (HMM E-Value=1.8)
          Length = 356

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = +2

Query: 452 HPPLDQRPGTSFPEHFQSAWRRRRLLTSVPGPHSY 556
           H P     GT FP HF S  RRR     VP  HSY
Sbjct: 56  HAPPSHADGT-FPAHFVSELRRRLAAVGVPHAHSY 89


>SB_57055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = +2

Query: 452 HPPLDQRPGTSFPEHFQSAWRRRRLLTSVPGPHSY 556
           H P     GT FP HF S  RRR     VP  HSY
Sbjct: 440 HAPPSHADGT-FPAHFVSELRRRLAAVGVPHAHSY 473


>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 293 FWHVNFQNISNTTVSATQIYDSITDFFPLNLIRMFLE 183
           F+H ++ N   + +S T ++ S T FF LN  R FL+
Sbjct: 726 FYHTSYSNSRVSVISPTTMFVSPTRFFRLNRSRYFLQ 762


>SB_23174| Best HMM Match : ABA_WDS (HMM E-Value=8.7)
          Length = 289

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +3

Query: 66  KKKSADKYFIAKKNIKSKMNNADLYRKSNSLQKRDALRCLEEHANKIKWKKIGDRVIDLG 245
           ++     + ++K+  K K+     Y +    +  +    +   + K +W + G  V+D+G
Sbjct: 143 RRTPKSNFSMSKQKQKGKVFIHGNYNRYYGYRNNNQSEDIRLKSFKKEWFQ-GKDVLDIG 201

Query: 246 CADGSVT-DILKVYMPKNYGRLVGCDISEEMVKYANKH 356
           C  G VT  I K Y P+    +VG DI   +++ A  +
Sbjct: 202 CNTGIVTLAIAKNYEPR---VIVGSDIDNSLIRIAKSN 236


>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
          Length = 1198

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 470 SDPVEGVKRENVIKALFQVCGQIALYVEHPERSPTEAVVFIRVFH 336
           ++P E + R N   +  Q+     + +EHPE  P + V+F R FH
Sbjct: 315 TEPAENITRRNERMSNVQLP---IILLEHPEEDPNKKVLFGRRFH 356


>SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)
          Length = 1605

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = +3

Query: 135  LYRKSNSLQKRDALRC-LEEHANKIKWKKIGDRVIDLGCADGSVTDILKVYMPKNYGRL- 308
            +Y +  SL+  DA R  L     K++ KK GD+ +D+GC  G++ +    Y  +NYG   
Sbjct: 1401 VYNEDESLE--DAQRNKLSAVCEKVQLKK-GDKHLDIGCGWGTLVN----YAAENYGSYS 1453

Query: 309  VGCDISEEMVKYANKHHG 362
             G  +++  V+   + +G
Sbjct: 1454 TGVTLAKNQVREMLEDNG 1471


>SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)
          Length = 742

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +3

Query: 606 LEHVDRFISPYHDNEDPEKEVKKIMERV 689
           +E ++    P+HD+ DPEK+ +K+++R+
Sbjct: 296 MERIEETCDPFHDDMDPEKK-RKMIDRL 322


>SB_49745| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1079

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
 Frame = +3

Query: 99   KKNIKSKMNNADLYRKSNSLQKRDALRCLEEHANKIKWKKIGDRVIDLGCADGSVTD--I 272
            KK  K K       ++ NSL+     R ++      K  K G  +ID+G   G   D   
Sbjct: 926  KKGKKDKNEKQQKIQEVNSLRINVCTRVIDYSTRYKKAGKTGMAIIDVGVFTGFAVDERS 985

Query: 273  LKVYMPKNYGRLVGCDISEEMVKY 344
            LK    K  G +   +ISE  V +
Sbjct: 986  LKELQKKMEGSIGKYEISERSVVF 1009


>SB_35462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 207 KWKKIGDRVIDLGCADGSVTDILKVYMPKNY 299
           KWK   ++++DLG  DG VT+++  +  + Y
Sbjct: 117 KWK--ANKLLDLGAGDGKVTEVMAPHFKEVY 145


>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 514  TKEIAYFCSWATLLSLMFTAHSRIQKNGILGSS 612
            T+++ ++ SW+TLL  M    S + +N  L SS
Sbjct: 1077 TQQLFFYLSWSTLLRSMSCNASSVSRNASLSSS 1109


>SB_4093| Best HMM Match : Lipase_GDSL (HMM E-Value=0.00026)
          Length = 220

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 258 SVTDILKVYMPKNYGRLVGCDISEE 332
           +V ++LK Y  ++ GR+V CD +EE
Sbjct: 186 NVNEMLKAYSDESAGRVVLCDFAEE 210


>SB_55630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +3

Query: 588 EKWHSWLEHVDRFISPYHDNEDPEKEVKKIME 683
           +++H W  H+D +I+ ++ N    KE+ + ++
Sbjct: 37  KRYHQWQHHLDEYIAAFNGNIPNSKEMYECVD 68


>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1308

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 432 DHVFSFYTLHWIRDQERAFR 491
           DH+     LHW+R+QERA R
Sbjct: 95  DHLTLQLELHWLREQERAKR 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,208,351
Number of Sequences: 59808
Number of extensions: 548393
Number of successful extensions: 1421
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)