Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M07
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    28   1.3  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    26   7.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.5  

>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 276 FVVRRNHQPVFFRK*ATKRRHREFSALPNHDNRFFVATIG 395
           F  R N Q  F+++     RH EFS   N +N FF+   G
Sbjct: 163 FSNRLNEQQSFYQRHLESTRH-EFSCQKNAENSFFIVFYG 201


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 176 VMLTNKVVAYEAHKIHKHSSKNHYIQRK*PYGAVCGKAESSTRIFSKMSNET 331
           V+L+N V+    H  +   +  HY+        +CG    S ++F  M NET
Sbjct: 363 VILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYYWSPKMFGLMYNET 414


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 509 VNWPPRSCDFSPLDYFLWDHERVGLREQTTKNWRS 613
           VN P  +  +SPLDY + DH  +G    T   WRS
Sbjct: 134 VNMPWGADQYSPLDYTILDH-HLG----TIDQWRS 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,303
Number of Sequences: 5004
Number of extensions: 73690
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)