Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M07
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)           79   3e-15
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)             42   4e-04
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.022
SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.022
SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)                   37   0.022
SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)                  36   0.029
SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)                 36   0.051
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
          Length = 999

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
 Frame = +1

Query: 127 FFIKIMFSDEAHFQLGGYVNKQSCRIRGSQNPQTLFEKPLHPKKVTVWCGLW*GGIINPY 306
           F   + FSDEAHF L G+VN ++    GS+ P+ + ++PLH  K T W  +   GII P+
Sbjct: 561 FLENVWFSDEAHFLLSGHVNTKNNIFWGSKVPEEVLQRPLHSVKCTAW-AMSKHGIIGPF 619

Query: 307 FFENEQRNAVTVNSLRYQTMITDFLWPQLA---NVDISDPWSQQDGATSRPNKSVIA 468
           +FE++   + TVN  RY  ++  + W  L     V  +  W QQDGAT       IA
Sbjct: 620 WFEDDDGRSQTVNKERYIAVLNKY-WASLGRRRGVVRASQWFQQDGATPHTANETIA 675



 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +2

Query: 431 TAPQVGQTNQLLHEKLPGRVISRFGDVNWPPRSCDFSPLDYFLW 562
           T     +T   L ++  GR+ISR  DV W P S D +P D++LW
Sbjct: 666 TPHTANETIAWLRQRFEGRLISRRCDVEWAPHSPDLNPPDFYLW 709


>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
          Length = 615

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/44 (43%), Positives = 28/44 (63%)
 Frame = +1

Query: 127 FFIKIMFSDEAHFQLGGYVNKQSCRIRGSQNPQTLFEKPLHPKK 258
           F   + FSDEAHF L G+VN ++    GS+ P+ + ++PLH  K
Sbjct: 194 FLENVWFSDEAHFLLFGHVNTKNNIFWGSKVPEEVLQRPLHSVK 237



 Score = 36.7 bits (81), Expect = 0.022
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 464 LHEKLPGRVISRFGDVNWPPRSCDFSPLDYFLW 562
           L ++   ++ISR  DV W P S D +P D++LW
Sbjct: 292 LRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLW 324



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 561 GTMKEWAYVNKPQKTGALKDEIRRSIDEISEVLLQNVAQIFVKRTDVC 704
           G +K+  Y   PQ    LK  I   I+ I +     V Q F +R  VC
Sbjct: 325 GFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVC 372


>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 464 LHEKLPGRVISRFGDVNWPPRSCDFSPLDYFLW 562
           L ++   ++ISR  DV W P S D +P D++LW
Sbjct: 68  LRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLW 100



 Score = 35.5 bits (78), Expect = 0.051
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 289 GIINPYFFENEQRNAVTVNSLRYQTMITDFL--WPQLANVDISDPWSQQDGATSRPNKSV 462
           GII P++FE++   + TV   RY  ++  +     +   V  +  W QQDGAT       
Sbjct: 5   GIIRPFWFEDDNGRSQTVKEERYIAVLNKYCASLGRRRGVVRASQWFQQDGATPHTANGT 64

Query: 463 IA 468
           IA
Sbjct: 65  IA 66



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 561 GTMKEWAYVNKPQKTGALKDEIRRSIDEISEVLLQNVAQIFVKRTDVC 704
           G +K+  Y   PQ    LK  I   I+ I +     V Q F +R  VC
Sbjct: 101 GFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVC 148


>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 464 LHEKLPGRVISRFGDVNWPPRSCDFSPLDYFLW 562
           L ++   ++ISR  DV W P S D +P D++LW
Sbjct: 68  LRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLW 100



 Score = 35.5 bits (78), Expect = 0.051
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 289 GIINPYFFENEQRNAVTVNSLRYQTMITDFL--WPQLANVDISDPWSQQDGATSRPNKSV 462
           GII P++FE++   + TV   RY  ++  +     +   V  +  W QQDGAT       
Sbjct: 5   GIIRPFWFEDDDGRSQTVKKERYIAVLNKYCASLGRRRGVVRASQWFQQDGATPHTANGT 64

Query: 463 IA 468
           IA
Sbjct: 65  IA 66



 Score = 34.7 bits (76), Expect = 0.088
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +3

Query: 561 GTMKEWAYVNKPQKTGALKDEIRRSIDEISEVLLQNVAQIFVKRTDVCRDARCGHLPXII 740
           G +K+  Y   PQ    LK  I   I+ I +     V Q F +R  VC     GHL  I+
Sbjct: 101 GFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLQRNGGHLEHIL 160


>SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)
          Length = 267

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 464 LHEKLPGRVISRFGDVNWPPRSCDFSPLDYFLW 562
           L ++   ++ISR  DV W P S D +P D++LW
Sbjct: 16  LRQRFEEKLISRRCDVEWAPHSPDLNPPDFYLW 48



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 561 GTMKEWAYVNKPQKTGALKDEIRRSIDEISEVLLQNVAQIFVKRTDVC 704
           G +K+  Y   PQ    LK  I   I+ I +     V Q F +R  VC
Sbjct: 49  GFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVC 96


>SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
          Length = 153

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 464 LHEKLPGRVISRFGDVNWPPRSCDFSPLDYFLW 562
           L ++   ++ISR  DV W P S D +P D++LW
Sbjct: 68  LRQRFEEKLISRRCDVEWVPHSPDLNPPDFYLW 100



 Score = 35.5 bits (78), Expect = 0.051
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 289 GIINPYFFENEQRNAVTVNSLRYQTMITDFL--WPQLANVDISDPWSQQDGATSRPNKSV 462
           GII P++FE++   + TV   RY  ++  +     +   V  +  W QQDGAT       
Sbjct: 5   GIIRPFWFEDDNGRSQTVKEERYIAVLNKYCASLGRRRGVVRASQWFQQDGATPHTANGT 64

Query: 463 IA 468
           IA
Sbjct: 65  IA 66



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 561 GTMKEWAYVNKPQKTGALKDEIRRSIDEISEVLLQNVAQIFVKRTDVC 704
           G +K+  Y   PQ    LK  I   I+ I +     V Q F +R  VC
Sbjct: 101 GFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVC 148


>SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
          Length = 254

 Score = 35.5 bits (78), Expect = 0.051
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 289 GIINPYFFENEQRNAVTVNSLRYQTMITDFL--WPQLANVDISDPWSQQDGATSRPNKSV 462
           GII P++FE++   + TV   RY  ++  +     +   V  +  W QQDGAT       
Sbjct: 5   GIIRPFWFEDDNGRSQTVKEERYIAVLNKYCASLGRRRGVVRASQWFQQDGATPHTANGT 64

Query: 463 IA 468
           IA
Sbjct: 65  IA 66



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 464 LHEKLPGRVISRFGDVNWPPRSCDFSPLDYFLW 562
           L ++   ++ISR  DV W   S D +P D++LW
Sbjct: 68  LRQRFEEKLISRRCDVEWAQHSPDLNPPDFYLW 100



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 561 GTMKEWAYVNKPQKTGALKDEIRRSIDEISEVLLQNVAQIFVKRTDVC 704
           G +K+  Y   PQ    LK  I   I+ I +     V Q F +R  VC
Sbjct: 101 GFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFARRVQVC 148


>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1916

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 570 SWSQRK*SSGEKSHERGGQLTSPNREITRPG 478
           SW +   S+ E+SH    +  +P R +TRPG
Sbjct: 25  SWMKAGYSTSERSHVENFRKPTPARRVTRPG 55


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 585 RKPTLSWSQRK*SSGEKSHERGGQLTSPNREITRPGNFSCNN 460
           + P ++W+  K +SG K H    Q  SP R    P    C +
Sbjct: 614 KSPIINWAMHKKTSGAKPHSNDIQPVSPGRLFGLPLQDLCTD 655


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,236,442
Number of Sequences: 59808
Number of extensions: 539199
Number of successful extensions: 1241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)