Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M07
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    43   2e-04
U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
 Frame = +1

Query: 136 KIMFSDEAHFQLGGYVNKQSCRIRGSQNPQTLFEKPLHPKKVTVWCGLW*GGIINPYFFE 315
           K++F+DE  F +    N Q+ R+     P +  ++  +PK + V+ G+   G   P  F 
Sbjct: 215 KVLFTDEKIFCIEQSFNTQNDRVYAKTQPNSRVQRTGYPKGIMVFAGITANG-KTPLIFV 273

Query: 316 NEQRNAVTVNSLRYQTMITDFLWPQLANVDISDPWS-QQDGATSRPNKSVIA 468
            +    + VN   Y  M+   L P +        W+ QQDGA +  +K+V A
Sbjct: 274 PQ---GIKVNGNNYLDMLKTELMPWVKKHFKKTKWTFQQDGAPAHKHKNVQA 322



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 515 WPPRSCDFSPLDYFLW 562
           WPP S D +P+DY +W
Sbjct: 337 WPPSSPDLNPMDYSVW 352


>U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical
           protein F41F3.8 protein.
          Length = 118

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 251 GCSGFSKSVCGFCEPRMR 198
           GC G S S+CG C PR R
Sbjct: 25  GCGGPSLSLCGGCAPRPR 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,847,007
Number of Sequences: 27780
Number of extensions: 414991
Number of successful extensions: 949
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)