Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M06
(798 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_1738| Best HMM Match : p450 (HMM E-Value=0) 45 8e-05
SB_15628| Best HMM Match : p450 (HMM E-Value=1.20512e-43) 45 8e-05
SB_9611| Best HMM Match : p450 (HMM E-Value=1.1e-05) 43 3e-04
SB_6244| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_51609| Best HMM Match : p450 (HMM E-Value=0) 42 6e-04
SB_15630| Best HMM Match : p450 (HMM E-Value=0) 41 0.001
SB_21442| Best HMM Match : p450 (HMM E-Value=0) 40 0.002
SB_51175| Best HMM Match : p450 (HMM E-Value=0) 39 0.004
SB_14189| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_2334| Best HMM Match : p450 (HMM E-Value=0) 39 0.004
SB_56127| Best HMM Match : p450 (HMM E-Value=2.3e-07) 38 0.012
SB_1725| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_22117| Best HMM Match : p450 (HMM E-Value=1.1e-09) 35 0.088
SB_38047| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_57069| Best HMM Match : GETHR (HMM E-Value=1.7e-10) 31 0.82
SB_588| Best HMM Match : p450 (HMM E-Value=0.17) 30 1.9
SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_1809| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_42553| Best HMM Match : VLPT (HMM E-Value=1) 29 3.3
SB_8405| Best HMM Match : PAN (HMM E-Value=0.044) 29 4.4
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_35141| Best HMM Match : p450 (HMM E-Value=0) 29 5.8
SB_6340| Best HMM Match : EMI (HMM E-Value=0.00055) 29 5.8
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 29 5.8
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 29 5.8
SB_58979| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_53864| Best HMM Match : Herpes_US9 (HMM E-Value=2) 28 7.6
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 49.6 bits (113), Expect = 3e-06
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Frame = +2
Query: 386 YIDKAEEYRFFKPWLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDK 565
+ D+ + +P L + L I G++W+ R ++PTF + +KS + L N ++ K
Sbjct: 120 FYDRPVPFELPEP-LDSFLSIVRGERWKRIRNTLSPTFTAHNMKSMVPLINVPCDTLMKK 178
Query: 566 LKKEA---SNFDCHDYMSECTVEILLETAMGVSKSTQ 667
++K A FD Y TVEI+L G+ Q
Sbjct: 179 IEKAAETGETFDIVKYQQAVTVEIILSIVFGIQSDCQ 215
>SB_1738| Best HMM Match : p450 (HMM E-Value=0)
Length = 484
Score = 44.8 bits (101), Expect = 8e-05
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 7/167 (4%)
Frame = +2
Query: 302 VVKIWIGPRLLVFLYDPRDVE--VILSSHVYIDKAEEYRFFKPW--LGNGLLISTGQKWR 469
V K++IG + + DP V+ VI H + ++ F KP + +G+ + G W+
Sbjct: 65 VHKMFIGRAAAIVVSDPEIVKQIVIKEFHKFPNRP---LFIKPNPPMDSGMFLGQGALWK 121
Query: 470 SHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEAS---NFDCHDYMSECTVEILLET 640
R + PTF LK + + + + + K+ A+ + DC + S ++++ +
Sbjct: 122 RIRTTLTPTFSTAKLKQIVPIIDKATATLQSKMASFAATGESTDCVNLFSLFALDVITIS 181
Query: 641 AMGVSKSTQDQSGFEYAMAVMKMCDILHLXHTKIWLRPDLLFKFTXY 781
A GV Q + K T IW+R +F F+ Y
Sbjct: 182 AFGVETDIQTDPDSSFYKLAKK------AFRTPIWVRAFSMFPFSEY 222
>SB_15628| Best HMM Match : p450 (HMM E-Value=1.20512e-43)
Length = 440
Score = 44.8 bits (101), Expect = 8e-05
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Frame = +2
Query: 458 QKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEA---SNFDCHDYMSECTVEI 628
+KW R ++P F + +K + L N++ +++KL K A +F H + T++
Sbjct: 139 EKWHRIRNTLSPAFSAHKMKLMVPLINSSCDVLINKLTKVAESGESFFTHKFHQGLTMDT 198
Query: 629 LLETAMGVSKSTQ---DQSGFEYAMAVMKMCDILHLXHTKIWLRP 754
+L+TA G+ Q D F+ A + + T ++L P
Sbjct: 199 ILKTAFGIQSEAQTNYDDPAFKAARKSLSTSTTRRVIVTLLFLMP 243
>SB_9611| Best HMM Match : p450 (HMM E-Value=1.1e-05)
Length = 278
Score = 43.2 bits (97), Expect = 3e-04
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +2
Query: 416 FKPWLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEASNFDC 595
F P L L +G++WR+ R ++P F + LKS + L N ++K+ + A
Sbjct: 16 FSPPLDKMLNALSGEEWRNLRHTLSPNFSAHKLKSMVPLMNKACDVYMEKITRAAETRAT 75
Query: 596 HDYMS---ECTVEILLETAMGVSKSTQD 670
D M T++I++ A GV Q+
Sbjct: 76 IDVMKINPALTLDIIISCAFGVESDCQN 103
>SB_6244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 41.9 bits (94), Expect = 6e-04
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Frame = +2
Query: 410 RFFKPWLGNGLLIS-TGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVD--KLKKEA 580
RFF+ LG L+ +G W+ HR+LI+P F + D+ N +R ++D +L++
Sbjct: 97 RFFQNVLGQFSLVGLSGDLWKKHRRLISPFFGRTYMTFASDIANQQTRKLIDRWRLQQPG 156
Query: 581 SNFDCHDYMSECTVEILLETAMGVSKSTQDQSGFEYAMAVMKMCD 715
S + + TV+I G Q+ A+ D
Sbjct: 157 SVIEAFSAVKNLTVDISGLVGFGYDLKVQENPDSTTCRAINAFLD 201
>SB_51609| Best HMM Match : p450 (HMM E-Value=0)
Length = 526
Score = 41.9 bits (94), Expect = 6e-04
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +2
Query: 416 FKPWLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEASNFDC 595
F P L L I G++WR+ R ++P F + LK + L N + K+ A +
Sbjct: 139 FSPPLDKMLTILPGEEWRNLRHALSPNFSAHKLKGMVPLMNKACDVYMKKIACAAETGET 198
Query: 596 HDYMS---ECTVEILLETAMGVSKSTQD 670
D M T++I++ A GV Q+
Sbjct: 199 IDVMKINPALTLDIIISCAFGVESDCQN 226
>SB_15630| Best HMM Match : p450 (HMM E-Value=0)
Length = 965
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +2
Query: 461 KWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEA---SNFDCHDYMSECTVEIL 631
KW R ++P F + +K + L N++ +++KL K A ++F H + T++ +
Sbjct: 140 KWHRIRTSLSPAFSAHKMKLMVPLINSSCDVLINKLTKIADSGTSFFVHKFHQGLTMDTI 199
Query: 632 LETAMGVSKSTQ 667
L+TA G+ Q
Sbjct: 200 LKTAFGIHSEAQ 211
>SB_21442| Best HMM Match : p450 (HMM E-Value=0)
Length = 565
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +2
Query: 422 PWLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLK---KEASNFD 592
P L + + ++ KW+ RK+IAP F + LK + L + + KL+ + + +
Sbjct: 121 PPLDSEMFLAKYPKWKRVRKVIAPAFSGSKLKGTVGLIEGAAERMNAKLESYSQTGESVE 180
Query: 593 CHDYMSECTVEILLETAMGVSKS 661
D S C ++++L +A GV S
Sbjct: 181 MTDLFSLCILDVILSSAFGVDTS 203
>SB_51175| Best HMM Match : p450 (HMM E-Value=0)
Length = 408
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +2
Query: 464 WRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLK---KEASNFD-CHDYMSECTVEIL 631
WR R + PTF LK + L + + R +V++L K+ + D C Y+ + T+E +
Sbjct: 40 WRRLRHFVTPTFSAVKLKQVVPLISESCRILVEQLGQACKDGKSVDVCRTYV-KFTMETI 98
Query: 632 LETAMGVSKSTQ 667
+ TA G+ TQ
Sbjct: 99 VSTAFGIDCQTQ 110
>SB_14189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +2
Query: 464 WRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLK---KEASNFD-CHDYMSECTVEIL 631
WR R ++ PTF +K + L + + R +V++L K+ + D C Y+ + T+E +
Sbjct: 40 WRRLRHIVTPTFSAVKIKQVVPLISESCRILVEQLGQACKDGKSVDVCRTYV-KFTMETI 98
Query: 632 LETAMGVSKSTQ 667
+ TA G+ TQ
Sbjct: 99 VSTAFGIDCQTQ 110
>SB_2334| Best HMM Match : p450 (HMM E-Value=0)
Length = 498
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +2
Query: 434 NGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEASNFDCHDYM-- 607
+G+ +T W+ R + PTF L+ + ++DK+ K A + D +
Sbjct: 125 HGMFSATDDNWKRIRSTLTPTFTSGKLRQMTPKMRESCDTLMDKIGKVADTGESVDILGM 184
Query: 608 -SECTVEILLETAMGVSKSTQ 667
S ++EI+L TA G+ Q
Sbjct: 185 FSPMSLEIILSTAFGIDSQVQ 205
>SB_56127| Best HMM Match : p450 (HMM E-Value=2.3e-07)
Length = 259
Score = 37.5 bits (83), Expect = 0.012
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 635 ETAMGVSKSTQDQSGFEYAMAVMKMCDILHLXHTKIWLRPDLLFKFT 775
ETAMGV+ + Q S EY V++M +++ + W+ P L+ T
Sbjct: 56 ETAMGVNINAQKNSSSEYVKGVIRMSELIQSRQKRPWVHPAFLYCLT 102
>SB_1725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 36.3 bits (80), Expect = 0.029
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Frame = +2
Query: 302 VVKIWIGPRLLVFLYDPRDVEVILSSHVYIDKAEEYR-----FFKPWLGNGLLISTGQK- 463
++ W +VF+ P V+ +L ++ Y + + G G+L
Sbjct: 79 IIVFWAFHNPVVFVVSPEMVKKVLVTYDLPKSTRVYEKLQFVYNQRCTGRGILTEPDPSA 138
Query: 464 WRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKL---KKEASNFDCHDYMSECTVEILL 634
W R L+ P FH L + + FN ++DKL + D D +S T++++
Sbjct: 139 WHKKRTLLNPAFHRKNLMNLMSPFNVICERMIDKLSLISDGKTQVDLADELSRTTLDVIG 198
Query: 635 ETAMGV 652
+ A +
Sbjct: 199 KVAFDI 204
>SB_22117| Best HMM Match : p450 (HMM E-Value=1.1e-09)
Length = 307
Score = 34.7 bits (76), Expect = 0.088
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2
Query: 440 LLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEASN---FDCHDYMS 610
+ + G+ W R ++P F + +K + L N + ++ KL++ A F+ +
Sbjct: 2 MFFAEGETWHRVRTTVSPIFSAHKMKMVLPLMNNSCDIMMSKLQQAAEKGEPFNMYRMGQ 61
Query: 611 ECTVEILLETAMGVSKSTQ 667
T++ +L G+ S Q
Sbjct: 62 SLTMDFILRIVFGIESSVQ 80
>SB_38047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 32.3 bits (70), Expect = 0.47
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 638 TAMGVSKSTQDQSGFEYAMAVMKMCDILHLXHTKIWLRPDLLFKFT 775
TAMGV+ + Q S EY V++M ++ + W+ P L+ T
Sbjct: 2 TAMGVNINAQKNSSSEYVKGVIRMSELALSRLKRPWVHPAFLYYLT 47
>SB_57069| Best HMM Match : GETHR (HMM E-Value=1.7e-10)
Length = 547
Score = 31.5 bits (68), Expect = 0.82
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +2
Query: 320 GPRLLVFLYDPRDVEVILSSHVYIDKAEEYRFF-KPWLGNGLLISTGQKWRSHRKLIAPT 496
G + V + DP ++ IL + + F K + GL S + W+ R + PT
Sbjct: 86 GKNVEVIVADPDMLKQILVKEFSSFRNRHFAFPPKGLIRLGLFASKDEDWKRVRSTLTPT 145
Query: 497 FHLNVLKSFIDLFNANSRAVVDKLKKEA 580
F +K+ I L + + ++ KL + A
Sbjct: 146 FTSGKMKTMIPLVSKSCDTLIQKLGEVA 173
>SB_588| Best HMM Match : p450 (HMM E-Value=0.17)
Length = 304
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +2
Query: 464 WRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEASN---FDCHDYMSECTVEILL 634
W+ R +++P FH K + +FNA + KL+ AS+ D + S T++++
Sbjct: 139 WKRKRGMLSPAFHRLWFKDSMGMFNAVCDKFLVKLEGYASSGEAVDLSEMFSRVTMDVIG 198
Query: 635 ETAMGVSKSTQDQSGFEYAMA 697
+ D E+ A
Sbjct: 199 KVGFNNDLRATDNDKCEFRAA 219
>SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 448 DKKTVSEPWFEETVFLSFIDVNVTTQ 371
D T+++PW T+ F+D+N TQ
Sbjct: 44 DTYTITQPWISYTITQPFLDINTITQ 69
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 487 DKFTMRSPFLTSTDKKTVSEPWFEETVFLSFIDVNVTTQ 371
D +T+ P+++ T ++ PW T+ F+D+N TQ
Sbjct: 116 DTYTITQPWISYT----ITHPWISYTISQPFLDINTITQ 150
>SB_1809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +2
Query: 407 YRFFKPWLGNGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEA 580
+R + + +G+ +T KW+ R + PTF L+ + ++DK+ K A
Sbjct: 15 FRDTRSEMRHGMFSATDDKWKRIRSTLTPTFTSGKLRQMTPKMRESCDTLMDKIGKVA 72
>SB_42553| Best HMM Match : VLPT (HMM E-Value=1)
Length = 399
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 446 ISTGQKWRSHRKLIAPTFHLNVLK 517
I TG KWR HR L+ H LK
Sbjct: 322 IVTGDKWRDHRHLLPQELHWKFLK 345
>SB_8405| Best HMM Match : PAN (HMM E-Value=0.044)
Length = 387
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 138 TPTGECQGGGCMSLLTN*TGLQDFRYSGTPWNSSVDLLT 254
T G C GGG ++ Q F YS WNS + T
Sbjct: 168 TDLGSCGGGGWTLVMKIDGNKQTFSYSSPKWNSMAEYQT 206
>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2124
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 200 EARLICQQAHTTAALTFASRRTRGLRPAQVTHRRG*SQKT 81
E RLI Q+ AL A R GL P + T R+G S +T
Sbjct: 167 EFRLILQEQERYYALKAAIRARHGLAPREKTSRKGPSLET 206
>SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 466 PFLTSTDKKTVSEPWFEETVFLSF-IDVNVTTQDDFHVARIVQKDEETRSYPDLNDGF 296
PFL TDK SE + +E LS N F+V KD +TR PD ++ F
Sbjct: 255 PFLDITDKVLTSENYADERGLLSIEFHPNYVRNGKFYVYYSTFKDNKTR--PDNDEPF 310
>SB_35141| Best HMM Match : p450 (HMM E-Value=0)
Length = 565
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 434 NGLLISTGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEA 580
+G+ +T KW+ R + PTF L+ + ++DK+ K A
Sbjct: 125 HGMFSATDDKWKRIRSTLTPTFTSGKLRQMNPKIRESCDTLMDKIGKVA 173
>SB_6340| Best HMM Match : EMI (HMM E-Value=0.00055)
Length = 591
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/84 (22%), Positives = 35/84 (41%)
Frame = +2
Query: 449 STGQKWRSHRKLIAPTFHLNVLKSFIDLFNANSRAVVDKLKKEASNFDCHDYMSECTVEI 628
S G KW R+ + P F + +A +D L+K+ DC ++ + T +
Sbjct: 411 SNGVKWSELRRRLNPQFDWEKMLQVAASRSAPVSMALDHLEKQQPLVDCGGFLWKMT-GL 469
Query: 629 LLETAMGVSKSTQDQSGFEYAMAV 700
L +G+ K D++ A+
Sbjct: 470 LPTNKIGLPKLVDDKAYMHQLFAI 493
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +3
Query: 198 LQDFRYSGTPWNSS-VDLLTSSE-T*FRRALTTITNPSLRSG*DLVSSSFCTILATWKSS 371
L+ + Y+G N + DL S+ + +AL IT+ D+ S I T S
Sbjct: 2015 LRGWTYTGEALNQARADLFAKSKRSNVAKALIMITDGYSNDAVDVPSKKLRDIGVTVLSV 2074
Query: 372 *VVTFTSIKLRNTVSSNHGSETVF 443
V SIK NT++++ SE VF
Sbjct: 2075 GVGKHVSIKQLNTIATDPDSENVF 2098
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 599 DYMSECTVEILLETAMGVSKSTQDQSGF 682
D +S CT++ L + A G+S S QSG+
Sbjct: 1745 DRVSRCTLDGLFKQATGISSSATRQSGY 1772
>SB_58979| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +2
Query: 35 LNMSYTNAENVVPTSTFSAINLFYVLLVPAVILWYAYWRMSRRRL--YELADKLN 193
+ +S+T+ + +A+ LF LV +I+ ++ W++SR R+ YE + K++
Sbjct: 160 VGLSFTSYSTIFGFIGVTAVLLFVFGLVMYIIVQHSLWKLSRPRVNPYENSTKIS 214
>SB_53864| Best HMM Match : Herpes_US9 (HMM E-Value=2)
Length = 615
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -2
Query: 200 EARLICQQAHTTAALTFASRRTRGLRPAQVTHRRG*SQKT 81
E RLI Q+ AL A R GL P + R+G S KT
Sbjct: 555 EFRLILQEQERYYALKAAIRARHGLAPREKKSRKGPSLKT 594
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,969,202
Number of Sequences: 59808
Number of extensions: 491582
Number of successful extensions: 1272
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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