Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M04
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              281   4e-76
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           56   3e-08
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)           29   3.4  
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   29   3.4  
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)                 29   4.5  
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_56341| Best HMM Match : PAP_assoc (HMM E-Value=5.9e-09)             28   6.0  
SB_11| Best HMM Match : E6 (HMM E-Value=2.2)                           28   6.0  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  281 bits (689), Expect = 4e-76
 Identities = 131/189 (69%), Positives = 153/189 (80%)
 Frame = +3

Query: 78  PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 257
           P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 258 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINK 437
           DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+NK
Sbjct: 64  DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123

Query: 438 KRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGKELEFYL 617
           KRS    RK  AR+  AKV   + EQF TGRL ACV+SRPGQ GR DGYIL GKELEFY+
Sbjct: 124 KRSNHCTRKLEARKANAKVAPGMEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYI 183

Query: 618 RKIKSXRAK 644
           +K+K+ +AK
Sbjct: 184 KKLKARKAK 192


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 24/77 (31%), Positives = 47/77 (61%)
 Frame = +3

Query: 138 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 317
           P++I   ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +N E +    +VK 
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96

Query: 318 AIVVVDATPFRQWYESH 368
           +IV VD  PF  W++ +
Sbjct: 97  SIVQVDNKPFEDWFQEY 113


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 54  RATGGKRAPIRKKRKYELGRPAANTRLGP 140
           R  GG R P+++   +E  +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 237 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 350
           T++ +I D++ N   N  VR +TL+ NA +++D   F+
Sbjct: 18  TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53


>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
          Length = 842

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 512 AIPHGAFAGLRGESPRSVWSRR 577
           A PH A +G+R  SPR +W  R
Sbjct: 108 ACPHHAVSGVRVSSPRGIWCSR 129



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 512 AIPHGAFAGLRGESPRSVWSRRWL 583
           A PH A +G+R   PRS+W  R L
Sbjct: 139 AYPHHAVSGVRVSPPRSIWCSRVL 162



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 512 AIPHGAFAGLRGESPRSVWSRRWL 583
           A PH A +G+R   PRS+W  R L
Sbjct: 201 ACPHHAVSGVRVSPPRSIWCSRVL 224



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 512 AIPHGAFAGLRGESPRSVWSRR 577
           A PH A +G+R   PRS+W  R
Sbjct: 232 ACPHHAVSGVRVSPPRSIWCSR 253


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 438 KRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGK 599
           ++S+K   K +   +L  +EG      H G LL    S    C R  GY + G+
Sbjct: 133 EKSEKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGYDIQGR 186


>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
          Length = 530

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -3

Query: 367 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 227
           CD+ HC   +  T+T+  + +V    + +   ++   ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494


>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 12  PTKMGISRDHWHKRRATGGKRAPIRKKRK-YELGRPAANTRLGPQRIHSV 158
           P    +S D W K++    K+  I+KKR+  +    A    LG QR+  +
Sbjct: 383 PKMQSLSYDEWLKQKREQDKKQAIKKKREIIDSHLDAVVAELGKQRVERI 432


>SB_56341| Best HMM Match : PAP_assoc (HMM E-Value=5.9e-09)
          Length = 503

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 560 SVWSRRWLHLXRQRTRVLSKKD 625
           + W   W H  RQR R+++++D
Sbjct: 327 TAWENTWTHSRRQRRRIIAERD 348


>SB_11| Best HMM Match : E6 (HMM E-Value=2.2)
          Length = 485

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
 Frame = +3

Query: 345 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLA---KVEGA---- 503
           F  W +    L   + +G  + E +E + N    +KT + YL         K++GA    
Sbjct: 174 FEAWKDIRKVLLNYKNEGTGIVEVDEGVTNN--IEKTLKLYLISPNHEIDQKLKGAPEKD 231

Query: 504 --LXEQFHTGRLLACVASRPGQCGRADGYILXG 596
               E FH    L CV  +  +    DGY L G
Sbjct: 232 IYFYETFHFLGGLQCVPLQENEISITDGYALMG 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,379,460
Number of Sequences: 59808
Number of extensions: 425213
Number of successful extensions: 1116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)