Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M02
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 48 2e-06
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 30 0.47
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 27 3.3
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 27 4.4
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 26 5.8
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 5.8
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch... 26 5.8
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 26 5.8
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 26 5.8
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 26 7.6
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 47.6 bits (108), Expect = 2e-06
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Frame = +2
Query: 257 RRSELLTKVKYCNTLPDIPFDLKFITYPFPSTRFVQYN-PTSLEKSYRYEVLTEHDLGVH 433
RR + + +V+Y N LP PF K I P P ++ N ++L + + + + +LG+
Sbjct: 5 RRQDYILRVRYHNPLPPPPFPPKLINIPNPVKQYALPNFVSTLVQEKKIPIENDIELGMP 64
Query: 434 IDLIN-RDIYQGDG---NAPLDPADEKLLEDDVLTPQDSKRSRHHAKNVSWLRRSEYIST 601
+DL ++GD ++ L + ++ +L S H V +LRR+EYIS+
Sbjct: 65 LDLAGITGFFEGDTSWMHSDLSSVNLDPIDRSLLKVAGGSGSTH--LEVPFLRRTEYISS 122
Query: 602 EATR 613
E R
Sbjct: 123 EVAR 126
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 29.9 bits (64), Expect = 0.47
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 503 LLEDDVLTPQDSKRSRHHAKNVSWLRRSEYISTEATR-FQPQSMEKVEAKVGYN 661
++EDD+ T + S H K++ L R++Y + TR P+ +EK+ + N
Sbjct: 309 IVEDDMDTNPSKRFSNPHTKHIMDLVRTQYRNVLRTRELIPEFLEKIRSSYSNN 362
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 359 VQYNPTSLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGN 475
V Y+PT L K YE+ L + + L + +IY+ DGN
Sbjct: 173 VVYHPTML-KERSYELHRVEVLRLLLSLFSEEIYRTDGN 210
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 433 HRFDQPRYIPRRW*CTIGSCRRE 501
H+ + IP RW T+ SCRR+
Sbjct: 69 HQLWKDENIPERWSNTVNSCRRQ 91
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 525 RPKIQRDPVIMPKMFHGYVVQNIYLRKLLDFSLS 626
R K + +P + ++ GYV +N KLLD++L+
Sbjct: 496 RIKSRNNPDLRVELVKGYVKKNFPSTKLLDYALA 529
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 407 LTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKRSRHH 556
+TE D+G D N+ + D DE++L+ LT QDS R + H
Sbjct: 35 ITEEDVGTD-DSCNKKFLEVQKQKE-DEEDEEILKGVDLTQQDSVREKIH 82
>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 200 PTIQTGEAERDKRPTRTGERRSELLTKVKYCNTLPDIPFDLKF 328
P I G +RD + E+ + L+ +Y + PD+PF LK+
Sbjct: 314 PFITAGGHDRDSA-IQMAEQENTLVAFGRYFLSNPDLPFRLKY 355
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 170 FNIHLYTDFISLVNKFTCQL*TQY--YKYIFVI 78
F+I L TDF+ +F C++ Y +KY +I
Sbjct: 724 FSIRLKTDFVKRAMRFLCEVFANYLDWKYARII 756
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 161 HLYTDFISLVNKFTCQL*TQYYKYIF 84
H + DF+ L N F C L + Y +F
Sbjct: 462 HFHEDFLRLQNSFNCLLDSGLYHQVF 487
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +2
Query: 320 LKFITYPFPSTRFVQYNPTSLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLD 487
L F+ + FP Y P S + Y E +L +L +R + + N PLD
Sbjct: 202 LDFLQFSFPVVFQRSYYPKSENRVYYSSFDLELNLDSPAELKHRRLVRSQRNGPLD 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,315,199
Number of Sequences: 5004
Number of extensions: 68635
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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