Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M02
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 50 2e-14
06_01_0159 + 1193479-1194435,1194509-1194652,1194735-1194821,119... 31 0.86
06_01_0158 - 1186903-1187013,1187108-1187197,1187504-1187590,118... 31 0.86
06_01_0790 - 5905817-5906595,5906722-5907085 29 4.6
02_05_0907 - 32663544-32663623,32663673-32663863,32664065-326641... 29 6.1
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 29 6.1
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70... 29 6.1
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 28 8.0
06_01_0948 - 7306108-7306389,7306485-7306702,7307335-7307371 28 8.0
02_04_0384 + 22513204-22513240,22513872-22514089,22514185-22514496 28 8.0
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 49.6 bits (113), Expect(2) = 2e-14
Identities = 23/70 (32%), Positives = 41/70 (58%)
Frame = +2
Query: 254 ERRSELLTKVKYCNTLPDIPFDLKFITYPFPSTRFVQYNPTSLEKSYRYEVLTEHDLGVH 433
++ + L K K+ N LPD LK++ R+ +Y TSLEK+Y +++ DLG+
Sbjct: 238 KKPTTFLCKHKFRNELPDPSSQLKWLPLNKDKDRYTKYRITSLEKNYIPKMIVPEDLGIP 297
Query: 434 IDLINRDIYQ 463
+DL++ +Y+
Sbjct: 298 LDLLDMSVYK 307
Score = 47.2 bits (107), Expect(2) = 2e-14
Identities = 39/94 (41%), Positives = 54/94 (57%), Gaps = 11/94 (11%)
Frame = +2
Query: 479 PLDPADEKLLEDD-VLTP--QDS--KRSRHHAKNVSWLRRSEYI---STEATRF---QPQ 625
P+ P DE+LL DD VLTP +D K+ R K +SWL +++YI ST+A + + Q
Sbjct: 345 PMAPEDEELLRDDEVLTPVKKDGIRKKERPTDKGMSWLVKTQYISPLSTDAAKMSITEKQ 404
Query: 626 SMEKVEAKVGYNVKKIFSEETLYMDRESQIXAIE 727
+ E+ E++ G N F E DRE QI AIE
Sbjct: 405 AKERRESREGRNT---FLEN--INDREKQIKAIE 433
>06_01_0159 +
1193479-1194435,1194509-1194652,1194735-1194821,
1194910-1195244,1195600-1195840,1195921-1195995,
1196072-1196157,1196591-1196663,1196805-1197535,
1197613-1197784,1197862-1197948,1198255-1198344,
1198439-1198549
Length = 1062
Score = 31.5 bits (68), Expect = 0.86
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 434 IDLINRDIYQGDGNAPLDPADEKLLEDD 517
ID IN DIY+ N P D +DE + +D+
Sbjct: 661 IDDINEDIYENPNNNPKDVSDEVIAQDE 688
>06_01_0158 -
1186903-1187013,1187108-1187197,1187504-1187590,
1187668-1187839,1187917-1188647,1188789-1188861,
1189295-1189380,1189455-1189529,1189610-1189643,
1190331-1190622,1191073-1191439
Length = 705
Score = 31.5 bits (68), Expect = 0.86
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 434 IDLINRDIYQGDGNAPLDPADEKLLEDD 517
ID IN DIY+ N P D +DE + +D+
Sbjct: 304 IDDINEDIYENPNNNPKDVSDEVIAQDE 331
>06_01_0790 - 5905817-5906595,5906722-5907085
Length = 380
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 431 HIDLINRDIYQGDGNAPLDPADEKLLEDD 517
H+ ++ + YQ DG AP+ D ++ DD
Sbjct: 114 HVGRVSTNEYQPDGQAPISSTDRQITPDD 142
>02_05_0907 -
32663544-32663623,32663673-32663863,32664065-32664162,
32664406-32664519,32664589-32664646,32664778-32664867,
32665414-32665505,32665898-32666008,32666120-32666374,
32666512-32666577,32666725-32666853
Length = 427
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 404 VLTEHDLGVHIDLINRDIYQGDGNAPL-DPADEKLLED 514
+L E +G HIDL++++ Y G+ L D +KLLE+
Sbjct: 163 LLVERLVGAHIDLVSKEEYGKIGSVALADLLKKKLLEE 200
>01_01_0090 +
706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 407 LTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDD 517
+ E+D+ ++ + +DIY+ N P D +DE + +D+
Sbjct: 664 INENDVLMYRKKLVKDIYENPNNNPKDVSDEVIAQDE 700
>01_01_0089 -
699533-699643,699738-700046,700134-700220,700298-700469,
700547-701373,701487-701559,701993-702078,702153-702227,
702308-702548,702905-703239,703328-703414,703497-703640,
703714-704670
Length = 1167
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 407 LTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDD 517
+ E+D+ ++ + +DIY+ N P D +DE + +D+
Sbjct: 664 INENDVLMYRKKLVKDIYENPNNNPKDVSDEVIAQDE 700
>09_06_0176 +
21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 479 PLDPADEKLLEDDVLTPQDSKRSRHHAKNVSWLRRSEYISTEATRFQPQSMEKV 640
P DPA+ + D+ L S+ A+ V+ RR E +S R P + V
Sbjct: 555 PTDPAENNVAYDNALGTTSSRDRVEKARRVALARRPEILSYVRNRSIPGDVRTV 608
>06_01_0948 - 7306108-7306389,7306485-7306702,7307335-7307371
Length = 178
Score = 28.3 bits (60), Expect = 8.0
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Frame = +2
Query: 395 RYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKRSRHHAKNVSW 574
RY + E +GVH D N+ GD + DP + E D++ +++K+ +
Sbjct: 41 RYTPVLEGYVGVHSDQ-NQS---GDSESEYDPLKDDTGEGDLIDDENAKQCSKEKTRKNC 96
Query: 575 LRRSEYISTEATRFQPQS---MEKVEAKVGYNVKKIFSEE 685
++ I T +F+ + E++ KV + K I ++
Sbjct: 97 NNKTSSIQTGGVKFRSRKRVYAEQMTPKVTRSKKSIAQQD 136
>02_04_0384 + 22513204-22513240,22513872-22514089,22514185-22514496
Length = 188
Score = 28.3 bits (60), Expect = 8.0
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Frame = +2
Query: 395 RYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKRSRHHAKNVSW 574
RY + E +GVH D N+ GD + DP + E D++ +++K+ +
Sbjct: 41 RYTPVLEGYVGVHSDQ-NQS---GDSESEYDPLKDDTGEGDLIDDENAKQCSKEKTRKNC 96
Query: 575 LRRSEYISTEATRFQPQS---MEKVEAKVGYNVKKIFSEE 685
++ I T +F+ + E++ KV + K I ++
Sbjct: 97 NNKTSSIQTGGVKFRSRKRVYAEQMTPKVTRSKKSIAQQD 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,549,751
Number of Sequences: 37544
Number of extensions: 402153
Number of successful extensions: 880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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