Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M02
(837 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17639| Best HMM Match : Paf1 (HMM E-Value=0) 131 8e-31
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 29 3.5
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_39038| Best HMM Match : BEX (HMM E-Value=3) 29 6.2
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0) 28 8.2
SB_38991| Best HMM Match : Utp12 (HMM E-Value=0.98) 28 8.2
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0) 28 8.2
SB_11438| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_2862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_17639| Best HMM Match : Paf1 (HMM E-Value=0)
Length = 335
Score = 131 bits (316), Expect = 8e-31
Identities = 59/94 (62%), Positives = 74/94 (78%)
Frame = +2
Query: 263 SELLTKVKYCNTLPDIPFDLKFITYPFPSTRFVQYNPTSLEKSYRYEVLTEHDLGVHIDL 442
S+ +T++KY N LPDIPFD KFI+YPF RFVQY PTSLEK+Y++E+LT+ DLGV+IDL
Sbjct: 2 SDFVTRIKYNNNLPDIPFDAKFISYPFEGNRFVQYKPTSLEKNYKHELLTDIDLGVNIDL 61
Query: 443 INRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKR 544
I+ +Y D NA LDPADEKLLE+D + D KR
Sbjct: 62 IDPQMYAVDPNATLDPADEKLLEEDAVVMPDKKR 95
Score = 39.5 bits (88), Expect = 0.003
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +3
Query: 777 KPGVTPVEVMPIFPDFDLW 833
KP +TPVEV+P+FPDF +W
Sbjct: 137 KPNLTPVEVLPVFPDFQMW 155
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 539 KRSRHHAKNVSWLRRSEYISTEATRFQPQSMEKVEAKV 652
KR H +KN+SW R + ++ R P++ KVE KV
Sbjct: 603 KRLPHTSKNLSWAERQK--KKKSARQPPKARPKVEPKV 638
>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1524
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 602 EATRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQIXAIEKTL*RXPRD 754
EA + EK+ A++ KKI E L D+E +I +E L P+D
Sbjct: 745 EADSSSIKDTEKLNAEIREFKKKIVELEKLVDDQEEEIKKLEDELKNVPKD 795
>SB_39038| Best HMM Match : BEX (HMM E-Value=3)
Length = 349
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 539 KRSRHHAKNVSWLRRSEYISTEATRFQPQSMEKVEAKVGYNVKKIFSEETL 691
+RSR + W+RRSE ++T R Q + + V N ++ +E L
Sbjct: 114 ERSRQECTGILWVRRSEALATGCGRRQGRLERRPRGTVAANRRREQAERLL 164
>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
Length = 360
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +2
Query: 335 YPFPSTRFVQYNPTSLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPL 484
+P + F +N ++ SY L +++L + +++ D++QGDG A +
Sbjct: 178 FPSHGSGFCIFNDLAITASY----LLDNNLVTRVMIVDLDVHQGDGTASI 223
>SB_38991| Best HMM Match : Utp12 (HMM E-Value=0.98)
Length = 809
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/86 (19%), Positives = 37/86 (43%)
Frame = +2
Query: 458 YQGDGNAPLDPADEKLLEDDVLTPQDSKRSRHHAKNVSWLRRSEYISTEATRFQPQSMEK 637
Y G+G A P +E + + +SK H K + + + E T+ +P+ +E
Sbjct: 563 YSGNGKAVEKPREESIPQQTTSKRDESKTPSQHRKQQEKKEQIKEMVAE-TKCKPRQLEI 621
Query: 638 VEAKVGYNVKKIFSEETLYMDRESQI 715
+ + + +E + ++R S +
Sbjct: 622 TSVQTWKAFQAAYKKELVTVERLSSV 647
>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
Length = 475
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 230 PFLLHLFVLWVAFYHLFSLHFNIHLY 153
PF+ H +V+ ++HLF+ HF+++ Y
Sbjct: 76 PFMHHSYVM--KYFHLFARHFDLYKY 99
>SB_11438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 491 ADEKLLEDDVLTPQDSKRSRHHAKNVSWLRRSEYISTEATRFQPQSME 634
++E+LL D + P+D KR +N + + + TRF+ + ME
Sbjct: 34 SEEELLSKDSIRPEDVKRLARSTENYLCEPTANVYNIDFTRFKIRDME 81
>SB_2862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +2
Query: 440 LINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKRSRHHAKNVSWLRRSEYISTEATRFQ 619
L N D D N +D D+ ++D+ DS H + + ++ S+E +R +
Sbjct: 70 LNNEDEADVDNNGDIDNVDKDFFDNDISNKNDSDNGTHRDSTLHPVSGNDLKSSEKSRVR 129
Query: 620 PQSMEKVEAKVGYNVKKI 673
+E + N++KI
Sbjct: 130 -FMLEIISNLRNNNLRKI 146
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,158,880
Number of Sequences: 59808
Number of extensions: 476826
Number of successful extensions: 1122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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