Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M02
(837 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC013402-1|AAH13402.1| 531|Homo sapiens Paf1, RNA polymerase II... 211 2e-54
BC000017-1|AAH00017.1| 531|Homo sapiens Paf1, RNA polymerase II... 211 2e-54
AJ401156-1|CAC20564.1| 531|Homo sapiens PD2 protein protein. 211 2e-54
AK001985-1|BAA92020.1| 531|Homo sapiens protein ( Homo sapiens ... 206 8e-53
AC005239-1|AAC25503.1| 510|Homo sapiens F23149_1 protein. 205 1e-52
AK098423-1|BAC05305.1| 485|Homo sapiens protein ( Homo sapiens ... 204 3e-52
AK057244-1|BAB71393.1| 690|Homo sapiens protein ( Homo sapiens ... 32 2.2
BC131494-1|AAI31495.1| 438|Homo sapiens FLJ32682 protein protein. 31 6.8
AL139326-3|CAH72890.1| 696|Homo sapiens protein ( Human DNA seq... 31 6.8
BC106952-1|AAI06953.1| 216|Homo sapiens hypothetical protein LO... 30 9.0
BC106951-1|AAI06952.1| 216|Homo sapiens hypothetical protein LO... 30 9.0
>BC013402-1|AAH13402.1| 531|Homo sapiens Paf1, RNA polymerase II
associated factor, homolog (S. cerevisiae) protein.
Length = 531
Score = 211 bits (516), Expect = 2e-54
Identities = 108/183 (59%), Positives = 133/183 (72%), Gaps = 3/183 (1%)
Frame = +2
Query: 194 MPPTIQT-GEAERDKRPT--RTGERRSELLTKVKYCNTLPDIPFDLKFITYPFPSTRFVQ 364
M PTIQT + E RP RT RS ++ +VKYCN+LPDIPFD KFITYPF RFVQ
Sbjct: 1 MAPTIQTQAQREDGHRPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQ 60
Query: 365 YNPTSLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKR 544
Y TSLEK +++++LTE DLGV IDLIN D Y+ D N LDPADEKLLE+++ P SKR
Sbjct: 61 YKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKR 120
Query: 545 SRHHAKNVSWLRRSEYISTEATRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQIXAI 724
S+ HAK V W+R++EYISTE R+ S EK E K+G +VK+ F+EE +Y DR+SQI AI
Sbjct: 121 SQQHAKVVPWMRKTEYISTEFNRY-GISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAI 179
Query: 725 EKT 733
EKT
Sbjct: 180 EKT 182
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +3
Query: 723 LKRPFEDXQETL*RXXTXKPGVTPVEVMPIFPDFDLW 833
+++ FED Q+++ + + KP VTPVEVMP+FPDF +W
Sbjct: 179 IEKTFEDAQKSISQHYS-KPRVTPVEVMPVFPDFKMW 214
>BC000017-1|AAH00017.1| 531|Homo sapiens Paf1, RNA polymerase II
associated factor, homolog (S. cerevisiae) protein.
Length = 531
Score = 211 bits (516), Expect = 2e-54
Identities = 108/183 (59%), Positives = 133/183 (72%), Gaps = 3/183 (1%)
Frame = +2
Query: 194 MPPTIQT-GEAERDKRPT--RTGERRSELLTKVKYCNTLPDIPFDLKFITYPFPSTRFVQ 364
M PTIQT + E RP RT RS ++ +VKYCN+LPDIPFD KFITYPF RFVQ
Sbjct: 1 MAPTIQTQAQREDGHRPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQ 60
Query: 365 YNPTSLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKR 544
Y TSLEK +++++LTE DLGV IDLIN D Y+ D N LDPADEKLLE+++ P SKR
Sbjct: 61 YKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKR 120
Query: 545 SRHHAKNVSWLRRSEYISTEATRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQIXAI 724
S+ HAK V W+R++EYISTE R+ S EK E K+G +VK+ F+EE +Y DR+SQI AI
Sbjct: 121 SQQHAKVVPWMRKTEYISTEFNRY-GISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAI 179
Query: 725 EKT 733
EKT
Sbjct: 180 EKT 182
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +3
Query: 723 LKRPFEDXQETL*RXXTXKPGVTPVEVMPIFPDFDLW 833
+++ FED Q+++ + + KP VTPVEVMP+FPDF +W
Sbjct: 179 IEKTFEDAQKSISQHYS-KPRVTPVEVMPVFPDFKMW 214
>AJ401156-1|CAC20564.1| 531|Homo sapiens PD2 protein protein.
Length = 531
Score = 211 bits (516), Expect = 2e-54
Identities = 108/183 (59%), Positives = 133/183 (72%), Gaps = 3/183 (1%)
Frame = +2
Query: 194 MPPTIQT-GEAERDKRPT--RTGERRSELLTKVKYCNTLPDIPFDLKFITYPFPSTRFVQ 364
M PTIQT + E RP RT RS ++ +VKYCN+LPDIPFD KFITYPF RFVQ
Sbjct: 1 MAPTIQTQAQREDGHRPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQ 60
Query: 365 YNPTSLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKR 544
Y TSLEK +++++LTE DLGV IDLIN D Y+ D N LDPADEKLLE+++ P SKR
Sbjct: 61 YKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKR 120
Query: 545 SRHHAKNVSWLRRSEYISTEATRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQIXAI 724
S+ HAK V W+R++EYISTE R+ S EK E K+G +VK+ F+EE +Y DR+SQI AI
Sbjct: 121 SQQHAKVVPWMRKTEYISTEFNRY-GISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAI 179
Query: 725 EKT 733
EKT
Sbjct: 180 EKT 182
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +3
Query: 723 LKRPFEDXQETL*RXXTXKPGVTPVEVMPIFPDFDLW 833
+++ FED Q+++ + + KP VTPVEVMP+FPDF +W
Sbjct: 179 IEKTFEDAQKSISQHYS-KPRVTPVEVMPVFPDFKMW 214
>AK001985-1|BAA92020.1| 531|Homo sapiens protein ( Homo sapiens
cDNA FLJ11123 fis, clone PLACE1006167. ).
Length = 531
Score = 206 bits (503), Expect = 8e-53
Identities = 106/183 (57%), Positives = 131/183 (71%), Gaps = 3/183 (1%)
Frame = +2
Query: 194 MPPTIQT-GEAERDKRPT--RTGERRSELLTKVKYCNTLPDIPFDLKFITYPFPSTRFVQ 364
M PTIQT + E RP RT RS ++ +VKYCN+LPDIPFD KFITYPF R VQ
Sbjct: 1 MAPTIQTQAQREDGHRPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRIVQ 60
Query: 365 YNPTSLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKR 544
Y TSLEK +++++LTE DLGV IDLIN D Y+ D N LDPADEKLLE+++ P SKR
Sbjct: 61 YKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKR 120
Query: 545 SRHHAKNVSWLRRSEYISTEATRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQIXAI 724
S+ HAK V W+R++EYISTE R+ S EK K+G +VK+ F+EE +Y DR+SQI AI
Sbjct: 121 SQQHAKVVPWMRKTEYISTEFNRY-GISNEKPGVKIGVSVKQQFTEEEIYKDRDSQITAI 179
Query: 725 EKT 733
EKT
Sbjct: 180 EKT 182
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +3
Query: 723 LKRPFEDXQETL*RXXTXKPGVTPVEVMPIFPDFDLW 833
+++ FED Q+++ + + KP VTPVEVMP+FPDF +W
Sbjct: 179 IEKTFEDAQKSISQHYS-KPRVTPVEVMPVFPDFKMW 214
>AC005239-1|AAC25503.1| 510|Homo sapiens F23149_1 protein.
Length = 510
Score = 205 bits (501), Expect = 1e-52
Identities = 105/180 (58%), Positives = 132/180 (73%)
Frame = +2
Query: 194 MPPTIQTGEAERDKRPTRTGERRSELLTKVKYCNTLPDIPFDLKFITYPFPSTRFVQYNP 373
M PTIQT +A+R+ RS ++ +VKYCN+LPDIPFD KFITYPF RFVQY
Sbjct: 1 MAPTIQT-QAQREDG------HRSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKA 53
Query: 374 TSLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKRSRH 553
TSLEK +++++LTE DLGV IDLIN D Y+ D N LDPADEKLLE+++ P SKRS+
Sbjct: 54 TSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQ 113
Query: 554 HAKNVSWLRRSEYISTEATRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQIXAIEKT 733
HAK V W+R++EYISTE R+ S EK E K+G +VK+ F+EE +Y DR+SQI AIEKT
Sbjct: 114 HAKVVPWMRKTEYISTEFNRY-GISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKT 172
>AK098423-1|BAC05305.1| 485|Homo sapiens protein ( Homo sapiens
cDNA FLJ25557 fis, clone JTH02756. ).
Length = 485
Score = 204 bits (498), Expect = 3e-52
Identities = 104/180 (57%), Positives = 132/180 (73%)
Frame = +2
Query: 194 MPPTIQTGEAERDKRPTRTGERRSELLTKVKYCNTLPDIPFDLKFITYPFPSTRFVQYNP 373
M PTIQT +A+R+ RS ++ +VKYCN+LPDIPFD KFITYPF RFVQY
Sbjct: 1 MAPTIQT-QAQREDG------HRSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKA 53
Query: 374 TSLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKRSRH 553
TSLE+ +++++LTE DLGV IDLIN D Y+ D N LDPADEKLLE+++ P SKRS+
Sbjct: 54 TSLERQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQ 113
Query: 554 HAKNVSWLRRSEYISTEATRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQIXAIEKT 733
HAK V W+R++EYISTE R+ S EK E K+G +VK+ F+EE +Y DR+SQI AIEKT
Sbjct: 114 HAKVVPWMRKTEYISTEFNRY-GISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKT 172
Score = 46.8 bits (106), Expect = 1e-04
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +3
Query: 723 LKRPFEDXQETL*RXXTXKPGVTPVEVMPIFPDFDLW 833
+++ FED Q+++ + + KP VTPVEVMP+FPDF +W
Sbjct: 169 IEKTFEDAQKSISQHYS-KPRVTPVEVMPVFPDFKMW 204
>AK057244-1|BAB71393.1| 690|Homo sapiens protein ( Homo sapiens
cDNA FLJ32682 fis, clone TESTI2000044, weakly similar to
TRICHOHYALIN. ).
Length = 690
Score = 32.3 bits (70), Expect = 2.2
Identities = 18/80 (22%), Positives = 36/80 (45%)
Frame = +2
Query: 476 APLDPADEKLLEDDVLTPQDSKRSRHHAKNVSWLRRSEYISTEATRFQPQSMEKVEAKVG 655
+P P E L + + L ++ + +L+ EY+ E + + +E KVG
Sbjct: 47 SPFSPEGESLEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEEHLEEEEYLE----KVG 102
Query: 656 YNVKKIFSEETLYMDRESQI 715
Y ++ + EE Y+ +E +
Sbjct: 103 YLEEEEYIEEEEYLGKEGYL 122
>BC131494-1|AAI31495.1| 438|Homo sapiens FLJ32682 protein protein.
Length = 438
Score = 30.7 bits (66), Expect = 6.8
Identities = 17/80 (21%), Positives = 35/80 (43%)
Frame = +2
Query: 476 APLDPADEKLLEDDVLTPQDSKRSRHHAKNVSWLRRSEYISTEATRFQPQSMEKVEAKVG 655
+P P E L + + L ++ + +L+ EY+ E + + +E K G
Sbjct: 47 SPFSPEGESLEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEEHLEEEEYLE----KAG 102
Query: 656 YNVKKIFSEETLYMDRESQI 715
Y ++ + EE Y+ +E +
Sbjct: 103 YLEEEEYIEEEEYLGKEGYL 122
>AL139326-3|CAH72890.1| 696|Homo sapiens protein ( Human DNA
sequence from clone RP11-351K3 on chromosome 13 Contains
the 3' end of the COG3 gene for component of oligomeric
golgi ).
Length = 696
Score = 30.7 bits (66), Expect = 6.8
Identities = 17/80 (21%), Positives = 35/80 (43%)
Frame = +2
Query: 476 APLDPADEKLLEDDVLTPQDSKRSRHHAKNVSWLRRSEYISTEATRFQPQSMEKVEAKVG 655
+P P E L + + L ++ + +L+ EY+ E + + +E K G
Sbjct: 47 SPFSPEGESLEDKEYLEEEEDLEEEEYLGKEEYLKEEEYLGKEEHLEEEEYLE----KAG 102
Query: 656 YNVKKIFSEETLYMDRESQI 715
Y ++ + EE Y+ +E +
Sbjct: 103 YLEEEEYIEEEEYLGKEGYL 122
>BC106952-1|AAI06953.1| 216|Homo sapiens hypothetical protein
LOC283129 protein.
Length = 216
Score = 30.3 bits (65), Expect = 9.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 320 LKFITYPFPSTRFVQYNPTSLEKSYRY 400
LK TYPFP TRF+ P + RY
Sbjct: 3 LKPFTYPFPETRFLHAGPNVYKFKIRY 29
>BC106951-1|AAI06952.1| 216|Homo sapiens hypothetical protein
LOC283129 protein.
Length = 216
Score = 30.3 bits (65), Expect = 9.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 320 LKFITYPFPSTRFVQYNPTSLEKSYRY 400
LK TYPFP TRF+ P + RY
Sbjct: 3 LKPFTYPFPETRFLHAGPNVYKFKIRY 29
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,342,200
Number of Sequences: 237096
Number of extensions: 2340007
Number of successful extensions: 7901
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7895
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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