Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M02
(837 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81051-8|CAB02869.1| 425|Caenorhabditis elegans Hypothetical pr... 142 3e-34
Z73098-1|CAA97330.2| 269|Caenorhabditis elegans Hypothetical pr... 33 0.19
X91803-1|CAA62913.1| 880|Caenorhabditis elegans sodium-calcium ... 28 7.2
U88180-12|AAO21402.1| 476|Caenorhabditis elegans Hypothetical p... 28 7.2
U88180-11|AAO21401.1| 566|Caenorhabditis elegans Hypothetical p... 28 7.2
U88180-10|AAO21403.1| 532|Caenorhabditis elegans Hypothetical p... 28 7.2
U88180-9|AAM22071.1| 517|Caenorhabditis elegans Hypothetical pr... 28 7.2
U88180-8|AAB42296.1| 607|Caenorhabditis elegans Hypothetical pr... 28 7.2
AL132858-14|CAJ90511.1| 873|Caenorhabditis elegans Hypothetical... 28 7.2
AL132858-13|CAB60477.1| 880|Caenorhabditis elegans Hypothetical... 28 7.2
>Z81051-8|CAB02869.1| 425|Caenorhabditis elegans Hypothetical
protein C55A6.9 protein.
Length = 425
Score = 142 bits (344), Expect = 3e-34
Identities = 71/174 (40%), Positives = 110/174 (63%), Gaps = 2/174 (1%)
Frame = +2
Query: 257 RRSELLTKVKYCNTLPDIPFDLKFITYPF-PSTRFVQYNPTSLEKSYRYEVLTEHDLGVH 433
R+ + + K ++ NT+PD+PFD KF+T PF P RFV++ P ++ + Y++ V+ + D+G++
Sbjct: 15 RKVDFMLKPRFTNTVPDVPFDAKFMTCPFVPLGRFVEFQPAAIYRDYKHAVICDDDMGLN 74
Query: 434 IDLINRDIYQGDG-NAPLDPADEKLLEDDVLTPQDSKRSRHHAKNVSWLRRSEYISTEAT 610
+DLI+ Y D +D D LLEDD +KRS+ H+K V W+R++EYISTE
Sbjct: 75 VDLIDLKKYDEDPIETEIDEKDNILLEDDGAAKLIAKRSQQHSKLVPWMRKTEYISTEFN 134
Query: 611 RFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQIXAIEKTL*RXPRDPIEXXY 772
RF + ++ E K+GYN+KK E +Y D++SQI AI KT R P++ Y
Sbjct: 135 RF-GVTADRQETKLGYNLKKNQQVEDMYRDKQSQIDAINKTF-EDVRKPVKEHY 186
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 723 LKRPFEDXQETL*RXXTXKPGVTPVEVMPIFPDFDLWK 836
+ + FED ++ + + K GV VE +FPDFD WK
Sbjct: 171 INKTFEDVRKPV-KEHYSKKGVKAVEESFVFPDFDHWK 207
>Z73098-1|CAA97330.2| 269|Caenorhabditis elegans Hypothetical
protein T21C9.1 protein.
Length = 269
Score = 33.5 bits (73), Expect = 0.19
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Frame = +2
Query: 344 PSTRFVQYN---PTSLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLD---PADEKL 505
P TR Q N P S+ S LT H L I+ I +Y+ + + P+ +
Sbjct: 159 PQTRSTQNNTDTPKSMSHSESKSRLTSHGLSAVIERIRGKVYEEEDAQSVTSYAPSTHSI 218
Query: 506 LEDDVLTPQDSKRSRHHAKNVSWLRRSEYIS 598
++D TP+ S +N SWL + Y+S
Sbjct: 219 IDDVPRTPR-KPLSLLDPRNNSWLTEALYVS 248
>X91803-1|CAA62913.1| 880|Caenorhabditis elegans sodium-calcium
exchanger protein.
Length = 880
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 527 PQDSKRSRHHAKNVSWLR-RSEYISTEAT-RFQPQSMEKVEAKVGYNVKKIFSEETLYMD 700
P+D+ + H+ + S+++ TE T F+P E+ + KVG I+ ++ +M
Sbjct: 417 PEDTTVTVHYRTIADTAQAESDFVHTEGTITFEPGQTEQ-KIKVGIVDNDIYEDDEQFMV 475
Query: 701 RESQIXA 721
R SQ+ A
Sbjct: 476 RLSQVRA 482
>U88180-12|AAO21402.1| 476|Caenorhabditis elegans Hypothetical
protein T27A3.1d protein.
Length = 476
Score = 28.3 bits (60), Expect = 7.2
Identities = 27/113 (23%), Positives = 49/113 (43%)
Frame = +2
Query: 377 SLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKRSRHH 556
S+ K+ V +H+L I+L+ + D P +DE L E T +++R R
Sbjct: 64 SVNKNLDTIVQLKHELNQRIELLRVYSHLDDDGLPRSNSDEALRERLKSTKSENERLR-- 121
Query: 557 AKNVSWLRRSEYISTEATRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQI 715
+ LR+ I T Q S +E ++ Y K+ S + L + +++
Sbjct: 122 -QECDLLRQESAIVTA----QKNSSYLLEKQLDYTNDKVISLQKLIEQKTTEL 169
>U88180-11|AAO21401.1| 566|Caenorhabditis elegans Hypothetical
protein T27A3.1c protein.
Length = 566
Score = 28.3 bits (60), Expect = 7.2
Identities = 27/113 (23%), Positives = 49/113 (43%)
Frame = +2
Query: 377 SLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKRSRHH 556
S+ K+ V +H+L I+L+ + D P +DE L E T +++R R
Sbjct: 64 SVNKNLDTIVQLKHELNQRIELLRVYSHLDDDGLPRSNSDEALRERLKSTKSENERLR-- 121
Query: 557 AKNVSWLRRSEYISTEATRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQI 715
+ LR+ I T Q S +E ++ Y K+ S + L + +++
Sbjct: 122 -QECDLLRQESAIVTA----QKNSSYLLEKQLDYTNDKVISLQKLIEQKTTEL 169
>U88180-10|AAO21403.1| 532|Caenorhabditis elegans Hypothetical
protein T27A3.1e protein.
Length = 532
Score = 28.3 bits (60), Expect = 7.2
Identities = 27/113 (23%), Positives = 49/113 (43%)
Frame = +2
Query: 377 SLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKRSRHH 556
S+ K+ V +H+L I+L+ + D P +DE L E T +++R R
Sbjct: 105 SVNKNLDTIVQLKHELNQRIELLRVYSHLDDDGLPRSNSDEALRERLKSTKSENERLR-- 162
Query: 557 AKNVSWLRRSEYISTEATRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQI 715
+ LR+ I T Q S +E ++ Y K+ S + L + +++
Sbjct: 163 -QECDLLRQESAIVTA----QKNSSYLLEKQLDYTNDKVISLQKLIEQKTTEL 210
>U88180-9|AAM22071.1| 517|Caenorhabditis elegans Hypothetical
protein T27A3.1b protein.
Length = 517
Score = 28.3 bits (60), Expect = 7.2
Identities = 27/113 (23%), Positives = 49/113 (43%)
Frame = +2
Query: 377 SLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKRSRHH 556
S+ K+ V +H+L I+L+ + D P +DE L E T +++R R
Sbjct: 105 SVNKNLDTIVQLKHELNQRIELLRVYSHLDDDGLPRSNSDEALRERLKSTKSENERLR-- 162
Query: 557 AKNVSWLRRSEYISTEATRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQI 715
+ LR+ I T Q S +E ++ Y K+ S + L + +++
Sbjct: 163 -QECDLLRQESAIVTA----QKNSSYLLEKQLDYTNDKVISLQKLIEQKTTEL 210
>U88180-8|AAB42296.1| 607|Caenorhabditis elegans Hypothetical
protein T27A3.1a protein.
Length = 607
Score = 28.3 bits (60), Expect = 7.2
Identities = 27/113 (23%), Positives = 49/113 (43%)
Frame = +2
Query: 377 SLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKRSRHH 556
S+ K+ V +H+L I+L+ + D P +DE L E T +++R R
Sbjct: 105 SVNKNLDTIVQLKHELNQRIELLRVYSHLDDDGLPRSNSDEALRERLKSTKSENERLR-- 162
Query: 557 AKNVSWLRRSEYISTEATRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQI 715
+ LR+ I T Q S +E ++ Y K+ S + L + +++
Sbjct: 163 -QECDLLRQESAIVTA----QKNSSYLLEKQLDYTNDKVISLQKLIEQKTTEL 210
>AL132858-14|CAJ90511.1| 873|Caenorhabditis elegans Hypothetical
protein Y113G7A.4b protein.
Length = 873
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 527 PQDSKRSRHHAKNVSWLR-RSEYISTEAT-RFQPQSMEKVEAKVGYNVKKIFSEETLYMD 700
P+D+ + H+ + S+++ TE T F+P E+ + KVG I+ ++ +M
Sbjct: 417 PEDTTVTVHYRTIADTAQAESDFVHTEGTITFEPGQTEQ-KIKVGIVDNDIYEDDEQFMV 475
Query: 701 RESQIXA 721
R SQ+ A
Sbjct: 476 RLSQVRA 482
>AL132858-13|CAB60477.1| 880|Caenorhabditis elegans Hypothetical
protein Y113G7A.4a protein.
Length = 880
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 527 PQDSKRSRHHAKNVSWLR-RSEYISTEAT-RFQPQSMEKVEAKVGYNVKKIFSEETLYMD 700
P+D+ + H+ + S+++ TE T F+P E+ + KVG I+ ++ +M
Sbjct: 417 PEDTTVTVHYRTIADTAQAESDFVHTEGTITFEPGQTEQ-KIKVGIVDNDIYEDDEQFMV 475
Query: 701 RESQIXA 721
R SQ+ A
Sbjct: 476 RLSQVRA 482
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,173,900
Number of Sequences: 27780
Number of extensions: 377855
Number of successful extensions: 913
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -