Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L22
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)        28   3.6  
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                28   3.6  
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                27   4.8  
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      27   4.8  
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)                   27   8.3  
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   8.3  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)
          Length = 893

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = -2

Query: 296 DLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSSFLT 129
           D H    V EN +    T    RL D +   +  +  +  +  VYF      +FLT
Sbjct: 670 DKHSAEHVAENVKPSCKTGSTRRLLDTLVAMQLLVKEMDSDPPVYFNSQTAEAFLT 725


>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 109 GASLRKMVKKLEVTQHAKYTCSFCGK 186
           G   +K ++  E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234


>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 171 LILW*GCYETFL-CRHLVL*AMQEDCSRRSLGILHYCCLIMQICCQEV 311
           ++L  GCY   L C H+V   M   C    + +L   C++M ICC +V
Sbjct: 127 VVLSLGCYVVMLLCHHVV---MSLSCY---IDMLLCRCVVMSICCYDV 168


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 166 TCSFCGKDAMKRS 204
           TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 12  CFSLSTFVSXRFPKMAKRPKKVGIXWQIW 98
           C+ L   +S +FP  +K+ ++V   WQ W
Sbjct: 427 CYQLQA-ISSKFPVHSKKKEEVSKAWQDW 454


>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/76 (18%), Positives = 31/76 (40%)
 Frame = -2

Query: 341 VYYLNYFTSRNLLTADLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVY 162
           + + + F   N   A +   + V     +    +L+         +++  AS  + E  +
Sbjct: 122 ILHHSIFWGNNFWFAAVTPPSDVTNKPSSASRGLLVLLFSQAAALRKKIAASCWEKESEF 181

Query: 161 FACWVTSSFLTILRRE 114
           + CWV S F+T  + +
Sbjct: 182 YECWVASFFITTAKTQ 197


>SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)
          Length = 292

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 305 LTADLHDEAAVVENTQAP 252
           +TADLHD A VV N + P
Sbjct: 247 ITADLHDTARVVVNLRTP 264


>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 618

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 121 RKMVKKLEVTQHAKYTCSFCGKDAMKRS 204
           R+ VK L + +  KY C  C KD  + S
Sbjct: 410 REQVKDLFIKEGEKYRCRLCSKDFTRLS 437


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 305  LTADLHDEAAVVENTQAP 252
            +TADLHD A VV N + P
Sbjct: 972  ITADLHDTARVVVNLRTP 989


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,975,290
Number of Sequences: 59808
Number of extensions: 219558
Number of successful extensions: 569
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)