Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L20
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    28   1.0  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    27   1.8  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    27   2.3  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    27   3.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   4.0  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    26   4.0  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   5.3  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   7.1  

>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 302 CSQQHKKQKDGLRADFI---SNIDVKTWQDRVSKNPESLWNLCEDYKCYPDIWSLH 460
           CSQ  +  K+G+ +  +   S +++ +  +  + NP  + N+C D+  +    SLH
Sbjct: 500 CSQPDESNKEGVASCLLLQKSGMEMTSVLEYSTPNPAEVQNICNDHAKFETSKSLH 555


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +2

Query: 128 DRWLQLFSL---FGYTNTDLESLHHANGPITPILQKNPIRRHISLRITAIRETFEELGIL 298
           D WL L  L    G  NT  E+   A   +  +++KN  RR++ + +      FEE+ + 
Sbjct: 320 DTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEKNAWRRYVYIWLNYC--LFEEIDVK 377

Query: 299 LCSQQHKKQKDGLR 340
              +  K  ++ L+
Sbjct: 378 DVDRARKVYQEALK 391


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 420 VKIISAIQTYGHYITGAI 473
           + I+SA Q+YG +ITG I
Sbjct: 196 IDIVSAFQSYGEFITGKI 213


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/75 (21%), Positives = 34/75 (45%)
 Frame = +2

Query: 224 KNPIRRHISLRITAIRETFEELGILLCSQQHKKQKDGLRADFISNIDVKTWQDRVSKNPE 403
           K  I   +  +  ++R+   EL  ++C +++ K        ++ ++D  T +D +SK   
Sbjct: 360 KELILSSLRYKDVSLRKKSLELLYMMCDEENAKLIVADLLQYLPHLDSVTQEDLISKVAI 419

Query: 404 SLWNLCEDYKCYPDI 448
                  DY+ Y D+
Sbjct: 420 ISETFATDYEWYVDV 434


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = -2

Query: 399 GFLLTLSCQVLTSILDMKSALKPSFCFLCC*LHSRIPNSSKVSLMAVILN 250
           GFL TLSC V+  + + +S        L   + SRIPN  KV LM+  +N
Sbjct: 692 GFLSTLSCVVVDEVHE-RSIENDILLTLLKLVISRIPN-LKVILMSATVN 739


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 440 PDIWSLHYWSNWLTP 484
           PDI +LHYW+  L+P
Sbjct: 214 PDIKNLHYWTTRLSP 228


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 377 QDRVSKNPESLWNLCEDYKCYPDIWSLHYWSNWLTPATLPKRFNTAFFVTAL 532
           +D  SK  + + N   D+  Y  + S+H    WL   T  +  N   FV AL
Sbjct: 41  KDMKSKRNKEVKNQMNDWLAYGYLCSVHEAKKWLEEETNNEYQNLDDFVDAL 92


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 51   VLGRVAVRFQTAWCSPAELPKTLTKTIAG 137
            ++G V  RFQ A  SP E+  TL     G
Sbjct: 1048 IMGEVEARFQQAVVSPGEMVGTLAAQSIG 1076


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,211
Number of Sequences: 5004
Number of extensions: 54323
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)