Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L20
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0401 - 5260308-5260361,5260457-5260507,5260764-5260809,526...    33   0.26 
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614...    29   4.2  
09_04_0606 + 18909065-18909218,18909674-18909737,18910895-189110...    28   5.5  
01_01_0676 + 5194718-5194940,5195420-5195952                           28   7.3  
08_02_1579 + 27997714-27998199,27998718-27998789,27999073-279991...    27   9.7  

>04_01_0401 -
           5260308-5260361,5260457-5260507,5260764-5260809,
           5260884-5260933,5261019-5261062,5261231-5261310,
           5261391-5261461,5261636-5261725,5262367-5262498,
           5263420-5263470,5263615-5263704,5263841-5263878,
           5265882-5266002,5267653-5267960,5268742-5268820,
           5270019-5270113,5270288-5270428,5270792-5270831
          Length = 526

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 197 NGPITPILQKNPIRRHISLRITAIRETFEELGILLCSQQHKKQKDGLRADF 349
           N  +T  L  NP  RH+   I  + ETF+  G+++  + +K + + L A F
Sbjct: 231 NWILTEKLHINPRDRHLYSAILVLGETFDNRGLMILMRNYKLRPEALAAAF 281


>03_02_0173 +
           6138406-6138628,6139769-6139857,6139922-6140608,
           6140682-6140834,6140922-6141290
          Length = 506

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +2

Query: 176 LESLHHANGPITPILQKNPIRRHISLRITAIRETFEELGILLCSQQHKKQKDGLR-ADFI 352
           ++SLH ++    P ++   +R   SL +  +R T  ELGILL S     +K G++  D I
Sbjct: 187 IQSLHLSHCSFRPTVEVVSLRSLTSLDLCLVRITDRELGILL-SNSLVLEKLGIKYCDKI 245

Query: 353 SNIDVKTWQDRVS 391
           + + +    +R+S
Sbjct: 246 NCLKIPCVLERLS 258


>09_04_0606 +
           18909065-18909218,18909674-18909737,18910895-18911023,
           18913680-18913830,18914369-18914491,18915638-18915711,
           18916048-18916591,18916948-18917085,18917159-18917203
          Length = 473

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 419 CEDYKCYPDIWSLHYWSNWLTPATLPKRFNTAFF 520
           C+D++C P +W L      L P+ LP  F+ A F
Sbjct: 324 CKDWRCVPLLWYLIMVQ--LEPSELPMAFSKAVF 355


>01_01_0676 + 5194718-5194940,5195420-5195952
          Length = 251

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 113 DADEDDRWLQLF-SLFGYTNTDLESLHHANGPITPILQKNPIRRHIS 250
           DA  D + LQ F  +  Y    +++L    GP+  IL+KN +++ ++
Sbjct: 35  DAMNDKKELQQFLGIVNYARNHIQNLAKLAGPLYAILRKNGMKKSMN 81


>08_02_1579 +
           27997714-27998199,27998718-27998789,27999073-27999120,
           27999203-27999357,27999477-27999671,27999743-27999854,
           27999955-28000024,28000110-28000168,28000251-28000374,
           28000465-28000535,28001053-28001154,28001242-28001322,
           28001504-28001662,28001757-28001807
          Length = 594

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 339 GRISYLILMLKLGRTE*ARIQKAFGTCVKIISAIQTYGHYITGAI 473
           GR++   +M+  G  +    Q   G    I+SA Q YG ++TG+I
Sbjct: 171 GRLNRPSIMIYGGTIKPGHFQ---GNSYDIVSAFQCYGEFVTGSI 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,872,160
Number of Sequences: 37544
Number of extensions: 334980
Number of successful extensions: 810
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)