Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L20
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.47 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.47 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
 Frame = +3

Query: 30  YXCQAVNVLGRVAVRFQTAWCSPAELPKTLTKTIAGYSCSVCLVTRTQI*SLYITLMVL- 206
           Y C A N +GRV  R        A+  K   + I G S     V R  + S    L+ + 
Sbjct: 106 YRCVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCVVPSFVKDLVRVV 165

Query: 207 ------SLQFYKRIPFEGTYH*ELQPSGKLL 281
                 S   Y  +  +G +H  L P+G+LL
Sbjct: 166 SWLQEPSFYIYPSLQGDGKFH--LLPTGELL 194


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
 Frame = +3

Query: 30  YXCQAVNVLGRVAVRFQTAWCSPAELPKTLTKTIAGYSCSVCLVTRTQI*SLYITLMVL- 206
           Y C A N +GRV  R        A+  K   + I G S     V R  + S    L+ + 
Sbjct: 106 YRCVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCVVPSFVKDLVRVV 165

Query: 207 ------SLQFYKRIPFEGTYH*ELQPSGKLL 281
                 S   Y  +  +G +H  L P+G+LL
Sbjct: 166 SWLQEPSFYIYPSLQGDGKFH--LLPTGELL 194


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 590 DPTXILNSSDVKLYPPQT 643
           D    LN SD+ LYP QT
Sbjct: 782 DVKTTLNISDIALYPSQT 799


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,542
Number of Sequences: 438
Number of extensions: 3705
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)