Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L19
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    33   0.002
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    24   1.4  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    24   1.4  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    23   2.5  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.6  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +2

Query: 269 DGFPLLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNNI 397
           D   +L RL+ + L+NNR+  + +N  H++ +L+ V L +N I
Sbjct: 36  DAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTI 78



 Score = 27.9 bits (59), Expect = 0.088
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +2

Query: 185 KLPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCIL---LNNNRIVRIGENLEHY 355
           KLP      A+      +D S N I  L     L R KC+    L+ NR+ +I       
Sbjct: 357 KLPLTSLSLASAQTLSELDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQIDAGTFKG 416

Query: 356 IPNLESVILTNNN 394
           IP L S+ L +N+
Sbjct: 417 IPRLASLNLGHNS 429


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 162 EXWIFEVISFHKSKI 206
           E W+ +V+SFHK K+
Sbjct: 65  EQWMQKVVSFHKLKL 79


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 162 EXWIFEVISFHKSKI 206
           E W+ +V+SFHK K+
Sbjct: 65  EQWMQKVVSFHKLKL 79


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -1

Query: 549 LIFLKS--NNLSSGILNATYAL*WFLLATGLCMSDNVRSFGNV 427
           LIFL +    L  GI+N+T  L + L+ T   M +N+ + G+V
Sbjct: 86  LIFLVNWYPRLIIGIMNSTLNLIFLLIQTRFEMINNIITRGDV 128


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 715 CXSDLM-DFLRCKICNFRIRHISTRYKCL 632
           C  D+  +FL   + N  IR   +RYK L
Sbjct: 175 CLMDVYYEFLLISLINILIRSFKSRYKDL 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,652
Number of Sequences: 336
Number of extensions: 3503
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)