Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_L19
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 153 3e-38
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 48 1e-06
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 46 7e-06
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 29 0.67
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 29 0.88
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 28 1.2
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 27 2.0
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 3.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 6.2
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 8.2
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 153 bits (370), Expect = 3e-38
Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 10/200 (5%)
Frame = +2
Query: 149 PCRXRXLDLRGYKLPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIV 328
P + LDLR Y++P IENLG D D IDF+DNDIR L FP +KRL+ +L NNRI
Sbjct: 17 PLKETELDLRWYQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFPRMKRLQTLLCGNNRIT 76
Query: 329 RIGENLEHYIPNLESVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAF 508
I ++ +PNL+++ L N++ E+ DLDPL++ P+L LS + NPVA K +YR Y+ +
Sbjct: 77 AIAPDIGKVLPNLKTLSLAQNHLQEIADLDPLASCPQLTNLSCIDNPVAQKQYYRLYLIW 136
Query: 509 KMPELRLLDFRKIKQKERDEANALF-KSRKGKEIQREI-AKKAKTF--------VPGGNM 658
++P L +LDF ++++ ER A +F + + EI I K++ F P N
Sbjct: 137 RIPSLHILDFERVRRNERLRAEEVFGQIQNPTEIASSIMGVKSRVFDLAALVQSHPEANS 196
Query: 659 PDPKVTNLTPQEIHKIRXAI 718
P LTP+E KI+ AI
Sbjct: 197 PITTGYTLTPEEREKIKEAI 216
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 48.4 bits (110), Expect = 1e-06
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Frame = +2
Query: 167 LDLRGYKLPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENL 346
L ++ ++ Q ENL + S N + G +L+ L+ + ++NN I + +
Sbjct: 197 LSIQSNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHL--SY 254
Query: 347 EHYIPNLESVILTNNNISELGDL-DPLSTLPKLRTLSLMHNPVANKNH--YRAYVAFKMP 517
+ NL + +NN +S ++ D LS L KL T+ NP+ N YR V +P
Sbjct: 255 LAGLKNLVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPLQKTNPAVYRNKVRLCLP 314
Query: 518 ELRLLD 535
+LR +D
Sbjct: 315 QLRQID 320
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 45.6 bits (103), Expect = 7e-06
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Frame = +2
Query: 311 NNNRIVRIGENLEHYIPNLESVILTNNNISELGDLDPLS---TLPKLRTLSLMHNPV--- 472
NN + V L P L ++ L NN I+ L DLDP S LP+L+ L L+ NP+
Sbjct: 224 NNLQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTKLPELQELVLVGNPIVTT 283
Query: 473 -ANK-NHYRAYVAFKMPELRLLDFRKIKQK 556
AN+ Y+ + + P+LRLLD I +
Sbjct: 284 FANRAMDYQREMVSRFPKLRLLDGNSINSE 313
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 29.1 bits (62), Expect = 0.67
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 311 NNNRIVRIGENLEHYIPNLE-SVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVANKNH 487
NN + I E +I N S T++N+S G L P T R L+ + NP N++H
Sbjct: 511 NNLPSLAISPVSEGFIQNATISTPSTSSNLSIAGSLTPSKTSRIYRGLAPLKNPEFNEDH 570
Query: 488 YR 493
+
Sbjct: 571 VK 572
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 28.7 bits (61), Expect = 0.88
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 182 YKLPQIENLGATLDQFDT-IDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYI 358
+KLP I + G+ T ++ +D D R + LL + + + E
Sbjct: 241 HKLPVIASTGSACKSDPTRVNIADISATSEDPLSRATRRRLRLLGIMEGIPVVFSTEKPD 300
Query: 359 PNLESVILTNNNISELGDLDPLSTLPKLR 445
P S++ + E GD+D LS LP+ R
Sbjct: 301 PRKASLLPLSEEEFEKGDVDELSALPEFR 329
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/89 (20%), Positives = 44/89 (49%)
Frame = +2
Query: 185 KLPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYIPN 364
++ ++ + L + + + +N+I +++ L+ L + L+NN++ + + +
Sbjct: 723 RIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNL--KASQPMIH 780
Query: 365 LESVILTNNNISELGDLDPLSTLPKLRTL 451
L + ++NN I +L + P LRTL
Sbjct: 781 LRILRISNNAIHQL----EVDQFPHLRTL 805
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 221 DQFDTIDFSDNDIRK--LDGFPLLKRLKCILLNNNRIVRIGE 340
DQ I +S ++ + ++GFPL+KR LN +I++I E
Sbjct: 4 DQIHKITYSGVEVFEYTINGFPLMKRCHDNWLNATQILKIAE 45
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +2
Query: 404 LGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANALF 583
L D D L ++ + + + P V +++PE+ +K +++++D+ A
Sbjct: 21 LDDFDGFMGLEEIEGVDIKYQPKGAMKE----VIYELPEVHEKKDKKPEKRKKDQKEASE 76
Query: 584 KSRKGK 601
K +KGK
Sbjct: 77 KKKKGK 82
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 365 NLVYNVPNSLLSSRSCYYSIEYISTFLAVENRQAF 261
+L YN+P+ L+ SC I+ I+ L +++ Q+F
Sbjct: 744 HLGYNIPSQLMELASCLQRIQLIAMCL-IDSVQSF 777
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = +2
Query: 434 PKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIK--QKERDEANALFKSRKGKEI 607
PKLR + R Y P++ +D IK ++ER + K + +
Sbjct: 321 PKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKAQEEERKRQAEIEKEIRQSRL 380
Query: 608 QREIAKKAK 634
Q E KK K
Sbjct: 381 QEEERKKKK 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,767
Number of Sequences: 5004
Number of extensions: 55977
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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