Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_L18
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha... 147 1e-36
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha... 112 4e-26
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 31 0.12
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 29 0.65
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 28 1.1
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 28 1.1
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 27 3.5
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 27 3.5
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 26 6.1
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 26 6.1
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 8.0
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 8.0
>SPCC1020.07 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 147 bits (357), Expect = 1e-36
Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Frame = +3
Query: 141 LFDMDGLLLNTEDLYTVGFQKVASRYGK-KFTFELKSRIMGQQTREFAGNIIKYLDLPLT 317
LFDMDGLL++TE +YT + RY K F+ E+K+++MG+ ++E + + + + LT
Sbjct: 7 LFDMDGLLVDTESIYTKSTNIILKRYNKGPFSMEVKAKMMGRTSKEASRIFLDWSGIDLT 66
Query: 318 IEDFVSETRQIFEELFPQSEILPGVKKLIYHLNQHNIPMGLATSSSKESYELKTLKHQDL 497
E++++ R+ EL+ ++ LPGV L+ L NIP+ LATSS ++E K+ L
Sbjct: 67 CEEYIALQRETQAELWRHTKPLPGVMNLLSKLKSLNIPIALATSSDTHNFEKKSAHLSHL 126
Query: 498 FDLFSHKTLGSSDP--DVKRGKPHPDIFIVAANKFLDKPDL--------EKCLVFEDSIN 647
FD F + DP V RGKPHPDI+ +A DK E CLVFEDSI
Sbjct: 127 FDHFDGNIITGDDPRLPVGRGKPHPDIWFIALKMINDKRKAQGQAEILPENCLVFEDSIT 186
Query: 648 GVKAARAAGMQVVMVPD 698
GV++ RAAGM+VV VPD
Sbjct: 187 GVQSGRAAGMKVVWVPD 203
>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 112 bits (270), Expect = 4e-26
Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 11/197 (5%)
Frame = +3
Query: 141 LFDMDGLLLNTEDLYTVGFQKVASRYGKK-FTFELKSRIMGQQTREFAGNIIKYLDLPLT 317
LFDMDGLL+++E +YT + RYGK +K+++MG+ A +I + ++P+T
Sbjct: 12 LFDMDGLLVDSETIYTKTTNLILDRYGKDPLPISVKAQMMGRPGSAAAKVVIDWSNIPMT 71
Query: 318 IEDFVSETRQIFEELFPQSEILPGVKKLIYHLNQHNIPMGLATSSSKESYELKTLKHQDL 497
+ FV E + I + + + +PG + LI +L+ H I +G+ T +KT + +
Sbjct: 72 PQQFVDEQQVIRAKFWSSLKPMPGAESLINNLSNHGIDIGVCTHPYAI---IKTAHLKHI 128
Query: 498 FDLFSHKTLGSSDPDVK--RGKPHPDIFIVAAN--------KFLDKPDLEKCLVFEDSIN 647
F+ F + +P + RGKP PDI++ N + L +C+ FEDSI
Sbjct: 129 FEKFGKNVITGDNPSIAPGRGKPFPDIWLKVLNLINESRKQRGLKALTPSQCIAFEDSIP 188
Query: 648 GVKAARAAGMQVVMVPD 698
GVK+A+AAGM V+ VPD
Sbjct: 189 GVKSAKAAGMHVIWVPD 205
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 31.5 bits (68), Expect = 0.12
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 174 EDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKYLDLPLTIEDFVSE-TRQI 350
E+ YT F+K+ +YG+ F LK + G+ + G + + L T E+ S + +I
Sbjct: 480 EEQYTDFFKKLKEKYGEFFQNLLKKELTGKPESDLEGLRLVGVQLQATYENLKSNFSARI 539
Query: 351 FEEL 362
F +L
Sbjct: 540 FNQL 543
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 29.1 bits (62), Expect = 0.65
Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 411 LNQHNIPMGLATSSSKESYELKTLKHQDLFDLFSHKTL-GSSDPDVKRGKPHPDIFIVAA 587
+N+ ++ G TS +++ +H+D+ +++ HK + G+ + +KRG+ FI+
Sbjct: 525 MNEPSVFRGPETSMHRDAIHYGGWEHRDIHNIYGHKCINGTYNGLIKRGEGAVRPFILTR 584
Query: 588 NKF 596
+ F
Sbjct: 585 SFF 587
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 599 EKLIGGYDKYIGVWLP 552
EK+ GGY KY G W+P
Sbjct: 67 EKVQGGYGKYQGTWVP 82
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 222 KKFTFEL-KSRIMGQQTREFAGNI-IKYLDLPLTIEDF--VSETRQIFEELFPQSEILPG 389
KK EL K ++ + R+ G I + YL+ T+ +F + ++ I E ++++
Sbjct: 845 KKSMGELYKMEMIHECPRQLFGQILVVYLNRERTLLNFYLIENSKTIDEATLQLTDLIQA 904
Query: 390 VKKLIYHLNQHNIP 431
+K IY+L N+P
Sbjct: 905 IKTGIYYLRMFNLP 918
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 599 EKLIGGYDKYIGVWLPS 549
EK+ GG KY G W+PS
Sbjct: 65 EKIQGGCGKYQGTWVPS 81
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 562 CGFPL--FTSGSEEPKVLCENKSNKS*CLSVFNSYDSLL 452
C F L F G + ++ C N S CLS NS DSLL
Sbjct: 599 CAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSPDSLL 637
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 652 TPLMESSKTRHFSKSGLSRNLLAATINISGCGFPLFTSGSEEPKVLCEN 506
TP+ ++ KT +S G+S + + S F L ++PKV+CE+
Sbjct: 981 TPIAKT-KTPRWSSFGIS---MVRELQFSETTFQLTDGAKKDPKVVCEH 1025
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +3
Query: 429 PMGLATSSSKESYELKTLKHQDLFDLFSHKTLGSSDPDVKRGKPHPDIFIVAANKFLDKP 608
P L + KE T K D + K L S P KPH + + + +F+DKP
Sbjct: 55 PQHLLSHLQKEENS-NTSKASSSEDEIAPKYLYPSSPSKSTKKPHNETEPLLSPQFIDKP 113
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 517 LCENKSNKS*CLSVFNSYDSLLLLVAKP 434
LC +++ K+ L+ F DS+L V KP
Sbjct: 257 LCADETKKNDLLAAFQEADSILAAVNKP 284
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 212 ALRQKVHVRIKKSDNGTADERVCREHNKISRFASYNRRFCIRDTSNL 352
A R K+ ++KKSD +CR N + + +C+ D ++
Sbjct: 1454 AERAKIRSKMKKSDVVVTSYDICR--NDVDELVKIDWNYCVLDEGHV 1498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,370
Number of Sequences: 5004
Number of extensions: 58026
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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