Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L18
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49517| Best HMM Match : Hydrolase (HMM E-Value=2.7e-27)             68   9e-12
SB_49516| Best HMM Match : Hydrolase (HMM E-Value=1.3e-29)             66   3e-11
SB_30790| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   7e-09
SB_36489| Best HMM Match : WTF (HMM E-Value=1.2)                       33   0.17 
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)                     29   2.8  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)              28   8.5  
SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)              28   8.5  
SB_49714| Best HMM Match : RGS (HMM E-Value=6)                         28   8.5  
SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)                      28   8.5  

>SB_49517| Best HMM Match : Hydrolase (HMM E-Value=2.7e-27)
          Length = 228

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 1/183 (0%)
 Frame = +3

Query: 129 VSHVLFDMDGLLLNTEDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKYLDL 308
           V  ++FD DG LL+T  L+   + K+    G +F  E    + G   ++    + +   +
Sbjct: 12  VKGLVFDCDGTLLDTMPLHWRAWCKICDETGLRFNKEDFYVLAGVPGKKIIDVLARQQGV 71

Query: 309 PLT-IEDFVSETRQIFEELFPQSEILPGVKKLIYHLNQHNIPMGLATSSSKESYELKTLK 485
            L  +E + S+ +    EL   S I   V K ++   +  IP+ +A+ SSK+  E K LK
Sbjct: 72  VLDPLEVYESKRKYFLSELASVSPI-QCVLKYVHEARKRGIPVAVASGSSKKQVE-KALK 129

Query: 486 HQDLFDLFSHKTLGSSDPDVKRGKPHPDIFIVAANKFLDKPDLEKCLVFEDSINGVKAAR 665
              + +LF    LG+ D      KPHPD F+ AA K+L     + C  FED+  G+++ R
Sbjct: 130 DTGILELFD-VILGNED--YTNHKPHPDAFLTAA-KYLGVA-AKDCWGFEDTDIGLESIR 184

Query: 666 AAG 674
            AG
Sbjct: 185 RAG 187


>SB_49516| Best HMM Match : Hydrolase (HMM E-Value=1.3e-29)
          Length = 203

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 51/183 (27%), Positives = 87/183 (47%)
 Frame = +3

Query: 129 VSHVLFDMDGLLLNTEDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKYLDL 308
           V  ++FD DG +L+T  L+   + ++ +  G  F  +   R+ G   +    ++     +
Sbjct: 9   VRGLIFDCDGTILDTMPLHWKAWCQICAETGLLFKKKDFYRLAGVPGKYIIRDLAIQQAI 68

Query: 309 PLTIEDFVSETRQIFEELFPQSEILPGVKKLIYHLNQHNIPMGLATSSSKESYELKTLKH 488
            L   +     +++F +       +P V K +Y   Q  IP+ +AT SS+   E K L  
Sbjct: 69  VLDPLEVYHRKKKLFLKGLSTVNSIPCVVKYVYEARQRGIPVAVATGSSRIQVE-KALTA 127

Query: 489 QDLFDLFSHKTLGSSDPDVKRGKPHPDIFIVAANKFLDKPDLEKCLVFEDSINGVKAARA 668
             + DLF    +G+ D      KP PD F++AA +    P  E C  FED+  G++A +A
Sbjct: 128 VGIIDLFD-VIIGNED--YIHPKPSPDAFLMAAERIGVDP--EDCWGFEDTDIGLEAIKA 182

Query: 669 AGM 677
           AG+
Sbjct: 183 AGL 185


>SB_30790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 27/72 (37%), Positives = 41/72 (56%)
 Frame = +3

Query: 171 TEDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKYLDLPLTIEDFVSETRQI 350
           TE +YT   QK+   YGK F   LK RIMG         +I  + LP+T+++F+S+   +
Sbjct: 2   TERIYTDITQKICQEYGKTFDISLKQRIMGNSKHVSTKVVINEMQLPITVDEFLSKAGAL 61

Query: 351 FEELFPQSEILP 386
              LFP +++LP
Sbjct: 62  NLTLFPTAKLLP 73


>SB_36489| Best HMM Match : WTF (HMM E-Value=1.2)
          Length = 1007

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 697 SGTITTCMPAARAAFTPLMESSKTRHFSKSGLSRNLLAATINISGCGFPLFTSGSEEPKV 518
           S T  +  P   +A T     S  +H + S ++R     T+N+SGC   LF +   +  +
Sbjct: 708 SQTPQSTTPNQTSASTRQQSHSNQQHAATSAINRTFKITTLNVSGCKIWLFENSISQSTL 767

Query: 517 LCENKSN 497
              N SN
Sbjct: 768 NGRNGSN 774


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +3

Query: 138 VLFDMDGLLLNTEDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKYLDLPLT 317
           +L +   LLL TEDLYT     +  R    FT ++ +R   + ++E    +I+   + LT
Sbjct: 134 LLLEPRSLLLLTEDLYTSYLHGIEGRAHDIFTTDIVNREQCKLSKELGSTLIRSTRISLT 193

Query: 318 I 320
           I
Sbjct: 194 I 194


>SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)
          Length = 529

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = +3

Query: 450 SSKESYELKTLKHQDLFDLF----SHKTLGSSDPDVKRGKPH-PDIFIVAANKFLDKPDL 614
           S K++  L TL  + L  LF    + K +GS DPD +RG P+ P++      K   + D 
Sbjct: 267 SDKDAGRLNTLLSKLLKTLFDERETEKKIGS-DPDKERGLPNIPNLLSAFVKKIFKEKD- 324

Query: 615 EKCLVFEDS 641
           EK LV  D+
Sbjct: 325 EKQLVNNDT 333


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 330  VSETRQIFEELFPQSEILPGVKKLIYHLNQHNIPMGLATS 449
            VSE ++      P  E + GVK +  H++  N+P+GL +S
Sbjct: 996  VSEPQKQVLRKLPVFETVGGVKGMAKHVSIENVPVGLESS 1035


>SB_50378| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
          Length = 969

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 176 GFIHGRVSKSGLALRQKVHVRIKKSDNGTADERVCRE 286
           G++ G  +  G  +R  VHV+I K+      +++C E
Sbjct: 878 GYLSGCPTNLGTGMRASVHVKIPKASEHPDFQKICDE 914


>SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
          Length = 725

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 176 GFIHGRVSKSGLALRQKVHVRIKKSDNGTADERVCRE 286
           G++ G  +  G  +R  VHV+I K+      +++C E
Sbjct: 633 GYLSGCPTNLGTGMRASVHVKIPKASEHPDFQKICDE 669


>SB_49714| Best HMM Match : RGS (HMM E-Value=6)
          Length = 167

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 171 TEDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKYLDLPLTIEDFVSE-TRQ 347
           T+DL +   +++ S   K  T EL   +  + T+E    + K L   LT  D  SE T+ 
Sbjct: 80  TDDLTSELTKELTSELTKDLTSELTKDLTSELTKELTSELTKDLTSELT-NDLTSELTKD 138

Query: 348 IFEEL 362
           +  EL
Sbjct: 139 LTSEL 143


>SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)
          Length = 356

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 108 NKMIYLPVSHVLFDMDGLLLNTEDLYTVGFQKVASRYGKKFTFELKSR 251
           NK     V +++   DGL+LN  +  T   +K A R G K  F+ K +
Sbjct: 197 NKRFDFIVFYIMDSDDGLMLNLTNFSTEDTKKSAIRTGPKKPFKRKEK 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,565,023
Number of Sequences: 59808
Number of extensions: 403538
Number of successful extensions: 1165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)