Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L18
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-16|AAK29860.1|  233|Caenorhabditis elegans Hypothetical p...   150   1e-36
AF143147-1|AAD37862.1|  233|Caenorhabditis elegans R151.8A prote...   150   1e-36
AF016439-5|AAB65900.1|  630|Caenorhabditis elegans Hypothetical ...    33   0.20 
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.    29   4.3  
U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated p...    29   4.3  
AL032626-5|CAA21525.1|  366|Caenorhabditis elegans Hypothetical ...    28   5.7  
L23651-3|AAY44021.1|  136|Caenorhabditis elegans Temporarily ass...    27   9.9  
L23651-1|AAA27964.3|  610|Caenorhabditis elegans Temporarily ass...    27   9.9  
AL034365-1|CAA22256.1|  322|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U00036-16|AAK29860.1|  233|Caenorhabditis elegans Hypothetical
           protein R151.10 protein.
          Length = 233

 Score =  150 bits (363), Expect = 1e-36
 Identities = 77/193 (39%), Positives = 115/193 (59%), Gaps = 3/193 (1%)
 Frame = +3

Query: 129 VSHVLFDMDGLLLNTEDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKYLDL 308
           V+HV+FD DGLL++TE  YT    ++  +YG  FT +LK R MG++  E    +I  L +
Sbjct: 5   VTHVIFDFDGLLVDTESAYTEANMELLRKYGHVFTMDLKRRQMGKRHDESIRWLINELKI 64

Query: 309 P--LTIEDFVSETRQIFEELFPQSEILPGVKKLIYHLNQHNIPMGLATSSSKESYELKTL 482
              +T E++  +  ++  E+F +S  +PG +KL+ HL    +P+ L T S   ++  K  
Sbjct: 65  GDLVTPEEYSRQYDELLIEMFKRSPAMPGAEKLVRHLLHTGVPVALCTGSCSRTFPTKLD 124

Query: 483 KHQDLFDLFSHKTLGSSDPDVKRGKPHPDIFIVAANKFLDKPD-LEKCLVFEDSINGVKA 659
            H+D  ++   + L   DP+VK GKPHPD F+V   +F   P+  +K LVFEDS NGV +
Sbjct: 125 NHKDWVNMIKLQVLSGDDPEVKHGKPHPDPFLVTMKRFPQVPESADKVLVFEDSYNGVLS 184

Query: 660 ARAAGMQVVMVPD 698
           A  AGMQ VMVP+
Sbjct: 185 ALDAGMQCVMVPE 197


>AF143147-1|AAD37862.1|  233|Caenorhabditis elegans R151.8A protein
           protein.
          Length = 233

 Score =  150 bits (363), Expect = 1e-36
 Identities = 77/193 (39%), Positives = 115/193 (59%), Gaps = 3/193 (1%)
 Frame = +3

Query: 129 VSHVLFDMDGLLLNTEDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKYLDL 308
           V+HV+FD DGLL++TE  YT    ++  +YG  FT +LK R MG++  E    +I  L +
Sbjct: 5   VTHVIFDFDGLLVDTESAYTEANMELLRKYGHVFTMDLKRRQMGKRHDESIRWLINELKI 64

Query: 309 P--LTIEDFVSETRQIFEELFPQSEILPGVKKLIYHLNQHNIPMGLATSSSKESYELKTL 482
              +T E++  +  ++  E+F +S  +PG +KL+ HL    +P+ L T S   ++  K  
Sbjct: 65  GDLVTPEEYSRQYDELLIEMFKRSPAMPGAEKLVRHLLHTGVPVALCTGSCSRTFPTKLD 124

Query: 483 KHQDLFDLFSHKTLGSSDPDVKRGKPHPDIFIVAANKFLDKPD-LEKCLVFEDSINGVKA 659
            H+D  ++   + L   DP+VK GKPHPD F+V   +F   P+  +K LVFEDS NGV +
Sbjct: 125 NHKDWVNMIKLQVLSGDDPEVKHGKPHPDPFLVTMKRFPQVPESADKVLVFEDSYNGVLS 184

Query: 660 ARAAGMQVVMVPD 698
           A  AGMQ VMVP+
Sbjct: 185 ALDAGMQCVMVPE 197


>AF016439-5|AAB65900.1|  630|Caenorhabditis elegans Hypothetical
           protein R02F11.4 protein.
          Length = 630

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
 Frame = +3

Query: 357 ELFPQSEILPG----VKKLIYHLNQHNIPMGLATSSSKESYELKTLKHQDLFDLFSHKTL 524
           +LFP+ +I+      + K I   N + + + LA +  KE+ +L   ++  + DL ++   
Sbjct: 96  KLFPKCQIIDARDCQINKFIADFNYNLLELHLARNQLKETNQLGRFENLKILDLSNNLI- 154

Query: 525 GSSDPDVKRGKPHPDIFIVAANKFLDKPDLEKCLVFE 635
              +P V     + +I  ++ N   + PDL KC+  +
Sbjct: 155 ---EPPVSFSLKNLEILNLSGNFLNEIPDLSKCVALQ 188


>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical
           protein C34G6.1 protein.
          Length = 1768

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 459 PYYCSLLNPL--ECCVDLDDK*VSLHQAVFRSEGKALRRFDVS 337
           PY   +LN L    C+D DD  V+L     ++  +A R FDV+
Sbjct: 334 PYLEDILNALFPNACLDPDDTTVTLSTQAIKNHSEAFRCFDVA 376


>U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.
          Length = 777

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -2

Query: 622 HFSKSGLSRNLLAATI-NISGCGFPLFTSGSEEPKVLCENKSN-KS*CLSVFNS 467
           H+S  G  RN     +  I GCG P F   SEE +  C  KS     CLS   S
Sbjct: 548 HYSPEGCHRNCFQLKVLEICGCGDPRFPLPSEEHR-HCNAKSKIDRQCLSNLTS 600


>U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated
           protein 8 protein.
          Length = 777

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -2

Query: 622 HFSKSGLSRNLLAATI-NISGCGFPLFTSGSEEPKVLCENKSN-KS*CLSVFNS 467
           H+S  G  RN     +  I GCG P F   SEE +  C  KS     CLS   S
Sbjct: 548 HYSPEGCHRNCFQLKVLEICGCGDPRFPLPSEEHR-HCNAKSKIDRQCLSNLTS 600


>AL032626-5|CAA21525.1|  366|Caenorhabditis elegans Hypothetical
           protein Y37D8A.5 protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 369 QSEILPGVKKLIYHLNQHNIPMGLATSSSKESY 467
           QS+I P  ++L+  L +   P+GLATSS  E +
Sbjct: 135 QSQIQPQTQELLSALQETQQPVGLATSSVVEIF 167


>L23651-3|AAY44021.1|  136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 250, isoform b protein.
          Length = 136

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 372 SEILPGVKKLIYHLNQHNIPMGLATSSSKESY 467
           SE +  +++++Y + + N PMG+A +   E Y
Sbjct: 23  SEEMEEIREVLYEMIKTNFPMGVAATHLSEKY 54


>L23651-1|AAA27964.3|  610|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 250, isoform a protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 372 SEILPGVKKLIYHLNQHNIPMGLATSSSKESY 467
           SE +  +++++Y + + N PMG+A +   E Y
Sbjct: 23  SEEMEEIREVLYEMIKTNFPMGVAATHLSEKY 54


>AL034365-1|CAA22256.1|  322|Caenorhabditis elegans Hypothetical
           protein Y69E1A.1 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 369 QSEILPGVKKLIYHLNQHNIPMGLATSSSKESY 467
           QS+I P  ++LI  L +   P+GL TSS  E +
Sbjct: 91  QSQIQPQTQELISALQETQSPIGLPTSSVVEIF 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,771
Number of Sequences: 27780
Number of extensions: 312352
Number of successful extensions: 959
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)