Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L16
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    30   0.49 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   4.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   7.9  

>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 370 PWIPSTEQHTEIGNMKKKVATLKTISKDERLFGLN 266
           PW+   E HTE+  +  +++   T S    LFG+N
Sbjct: 158 PWLNYVEPHTELPRLPFELSHASTASAKSPLFGMN 192


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 400 HINREVINESNLFGDYGIK*CVCIIFKINSL 492
           H+NR+++   NL G  G+    C+I   NSL
Sbjct: 739 HVNRDLVR--NLLGSKGLLRSRCVILSTNSL 767


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 250 KLQKCCLNQIIFHPSISFLVLPLSFSYCQFLYVARLKVS 366
           KL + C+N      S+ F V P+  SY +FL ++   +S
Sbjct: 498 KLNRNCMNAQSLMSSLGFSVPPM--SYAEFLIISSFHIS 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,566
Number of Sequences: 5004
Number of extensions: 66724
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)