Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L16
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0075 - 14676835-14677173,14677776-14678426,14678734-146789...    31   1.2  
07_03_0803 - 21620754-21620955,21621718-21621780,21622172-216222...    31   1.6  
11_08_0095 - 28323425-28323494,28323577-28323657,28323744-283241...    30   2.1  
10_08_0830 - 20888051-20888779                                         29   6.3  

>10_08_0075 -
           14676835-14677173,14677776-14678426,14678734-14678948,
           14679510-14679783,14680249-14680410
          Length = 546

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 252 IAKMLFKPNNLSSFDIVFSVATFFFILPISVCCSVEGI 365
           ++ ML K N +S +D+V+ +  F  +LP++   SVE +
Sbjct: 341 LSMMLVKTNKVSRYDLVYKLLKFVLVLPVAT-ASVERV 377


>07_03_0803 -
           21620754-21620955,21621718-21621780,21622172-21622250,
           21623312-21623424,21623500-21623798
          Length = 251

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 403 CVMKIF-LNHPAPWIPSTEQHTEIGNMKK 320
           C+MK F + HP PW+ S +   E+ N+ K
Sbjct: 148 CIMKSFEIVHPQPWMFSPQSRLEVANLLK 176


>11_08_0095 -
           28323425-28323494,28323577-28323657,28323744-28324157,
           28324236-28324381,28325911-28326048,28326192-28326224
          Length = 293

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = +1

Query: 166 VYFVQ-IAAVFFCCYGIFSKF*LSNGS--PVKLQKCCLNQIIFHPSISFLVLPLSFSYCQ 336
           V+F+  + ++ F  +G+F+K+ +   S  P    +C L  I++H  ++  V+ LS+   +
Sbjct: 34  VFFLSGLPSLLFERFGLFAKYKIQKKSNTPSYQNRCVLRLILYHVCVNLPVMVLSYPAFK 93

Query: 337 FL 342
           F+
Sbjct: 94  FM 95


>10_08_0830 - 20888051-20888779
          Length = 242

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 622 LAVTSREKRQTCHKPTLGPIVYLSLVPRSR 711
           L VT R++   C  PT+    YL++ PR R
Sbjct: 62  LNVTPRDRGPGCSAPTVNATFYLNVTPRDR 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,715,637
Number of Sequences: 37544
Number of extensions: 383066
Number of successful extensions: 750
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)