Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L16
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59561| Best HMM Match : Pox_A32 (HMM E-Value=0.077)                 31   1.2  
SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)               31   1.6  

>SB_59561| Best HMM Match : Pox_A32 (HMM E-Value=0.077)
          Length = 986

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -2

Query: 448 RNRQINSIRLSLRGLCVMKIFLNHPAPWIPSTEQHTEIGNMKKKVATLKTISKDERLFG 272
           + ++ + +   LR    + + L+ P   +P+  + TEI + +KK+A L    K   + G
Sbjct: 446 KTKKFSKLEFCLRHPYTIALTLDCPTQAVPAAGEQTEIADARKKLAILVASGKSREMVG 504


>SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)
          Length = 196

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 858 MXPCQARPVR*SFGKNIRSCFSSDNIL*IDERWL 757
           M PC  + +R S G+N+  C + DN+L   ER+L
Sbjct: 55  MGPCDVQALRQSSGQNVSEC-ARDNLLQFGERYL 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,754,053
Number of Sequences: 59808
Number of extensions: 474343
Number of successful extensions: 1034
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)