Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L16
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p...    30   2.4  
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p...    30   2.4  
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact...    30   2.4  
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    30   2.4  
Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical pr...    29   5.6  

>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
           protein 10, isoform b protein.
          Length = 1371

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 397 MKIFLNHPAPWIPSTEQHTEIGNM 326
           ++ FL+HP  W PS +Q   IG+M
Sbjct: 621 IRTFLSHPVTWQPSADQKKLIGHM 644


>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
           protein 10, isoform a protein.
          Length = 1563

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 397 MKIFLNHPAPWIPSTEQHTEIGNM 326
           ++ FL+HP  W PS +Q   IG+M
Sbjct: 621 IRTFLSHPVTWQPSADQKKLIGHM 644


>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
           molecule UNC-10 protein.
          Length = 1563

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 397 MKIFLNHPAPWIPSTEQHTEIGNM 326
           ++ FL+HP  W PS +Q   IG+M
Sbjct: 621 IRTFLSHPVTWQPSADQKKLIGHM 644


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
           protein F52C12.4 protein.
          Length = 1635

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +1

Query: 796 KTRSDILAKALSYGAGLTRSH 858
           ++R+D L K++S GAGLT SH
Sbjct: 11  RSRTDFLGKSMSSGAGLTGSH 31


>Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical
           protein C08F11.2 protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +1

Query: 166 VYFVQIAAVFFCCYGIFSKF*LSNGSPVKLQKCCLNQIIFHPSISFLVLPLSFS 327
           +YFVQ+  +F C   IF+ + LS    ++    C+N I+  P +   ++ +S++
Sbjct: 235 IYFVQMLYIFTCAVRIFT-YELSGHDSIEAVMQCVNMIV--PYLIPTIISISYT 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,472,248
Number of Sequences: 27780
Number of extensions: 367119
Number of successful extensions: 814
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)