Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L16
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.68 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   1.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   1.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.7  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   3.6  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   3.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
 Frame = -3

Query: 612 IVPLLTLSRKI-----IVRKPTLQTTNNYFL 535
           IVP LTL   +     +VR+  LQT  NYF+
Sbjct: 195 IVPCLTLFGNVLVILAVVRERALQTVTNYFI 225


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 403 CVMKIFLNHPAPWIPSTEQHTEIGNMKKKVATLKTISKDER 281
           CV+ + L+  + WI        +G     V TL TIS D R
Sbjct: 255 CVLIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSR 295


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 582 IIVRKPTLQTTNNYFL 535
           +I++ P +QT  NY+L
Sbjct: 64  VIIKNPAMQTATNYYL 79


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 370 PWIPSTEQHTEIGNMKKKVATLKTISKDER 281
           P  P T +HT +G + K    +K++ + ER
Sbjct: 76  PLGPETSRHTTLGLLTKAKRFIKSLEERER 105


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 582 IIVRKPTLQTTNNYFL 535
           +I R P++QT  NY+L
Sbjct: 57  VIWRNPSMQTPTNYYL 72


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 418 SLRGLCVMKIFLNHPAPWIP 359
           SL  LC+  IF+N    W+P
Sbjct: 12  SLALLCLHAIFVNAAPDWVP 31


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 418 SLRGLCVMKIFLNHPAPWIP 359
           SL  LC+  IF+N    W+P
Sbjct: 12  SLALLCLHAIFVNAAPDWVP 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,413
Number of Sequences: 438
Number of extensions: 4420
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)