Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L15
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...   148   7e-37
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    29   0.71 
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   3.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   3.8  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.6  

>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score =  148 bits (358), Expect = 7e-37
 Identities = 68/162 (41%), Positives = 104/162 (64%), Gaps = 8/162 (4%)
 Frame = +2

Query: 134 LDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKV 313
           L +++C++VDE D  +   TK+ECH +      LLHRAFS+F+F+++  + LQ+R+ +K+
Sbjct: 17  LMEEVCIVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKI 76

Query: 314 TYPDYYTNACCSHPL--------YIDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMT 469
           T+P  +TN CCSHPL         + E  E +  AA+R++ HELGI    +  + F F+T
Sbjct: 77  TFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLT 136

Query: 470 RVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFV 595
           R+HY  P  G WGEHEID+ILFF+  V++  N +E+  Y +V
Sbjct: 137 RIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYV 178


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 149 CLLVDEKDNFIGTATKRECHKVGPDGDVLLH 241
           C++VDE DN I +A  R      PDGDV  H
Sbjct: 34  CIIVDENDNVIMSAGNRV-----PDGDVTQH 59


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 455 FTFMTRVHYHDPGDGVW 505
           +TFMT  H+ +P +GVW
Sbjct: 543 WTFMTVQHWAEPPEGVW 559


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 237 SSTSPSGPTL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPS 103
           SS+S S  +   S   +VP+  S SS+    S S +S+ ++SRPS
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 612 LNXALGTKQYSEISSEFGLTLTSLWKNSMWSISCSPHTP 496
           L+  +    Y++I +EFG      W  + + ISC+   P
Sbjct: 104 LDNTIVASTYTKIGAEFGKFSQVSWTATAYMISCTAFQP 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,283
Number of Sequences: 5004
Number of extensions: 52996
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)