Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L15
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl dip...   103   1e-22
AY597336-1|AAT08468.1|  236|Caenorhabditis elegans isopentenyl-d...   103   1e-22

>L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl
           diphosphate isomeraseprotein 1 protein.
          Length = 236

 Score =  103 bits (246), Expect = 1e-22
 Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 8/157 (5%)
 Frame = +2

Query: 95  LAKDGLELAQAEALD----KDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFL 262
           +A+  +EL+  +A      ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF 
Sbjct: 13  MARRAVELSSYDAQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFS 69

Query: 263 FNKRGDMFLQRRSSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPL 433
           F     + +Q+RS++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI  
Sbjct: 70  FTSDNKLLMQKRSAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITG 129

Query: 434 DQLDPELFTFMTRVHYH-DPGDGVWGEHEIDHILFFQ 541
             L+   F    +  Y  +  +  WGEHE+D+ L  +
Sbjct: 130 VSLNK--FQMAGKYIYRAEMNNAPWGEHELDYALILR 164


>AY597336-1|AAT08468.1|  236|Caenorhabditis elegans
           isopentenyl-diphosphate isomerase protein.
          Length = 236

 Score =  103 bits (246), Expect = 1e-22
 Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 8/157 (5%)
 Frame = +2

Query: 95  LAKDGLELAQAEALD----KDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFL 262
           +A+  +EL+  +A      ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF 
Sbjct: 13  MARRAVELSSYDAQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFS 69

Query: 263 FNKRGDMFLQRRSSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPL 433
           F     + +Q+RS++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI  
Sbjct: 70  FTSDNKLLMQKRSAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITG 129

Query: 434 DQLDPELFTFMTRVHYH-DPGDGVWGEHEIDHILFFQ 541
             L+   F    +  Y  +  +  WGEHE+D+ L  +
Sbjct: 130 VSLNK--FQMAGKYIYRAEMNNAPWGEHELDYALILR 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,084,079
Number of Sequences: 27780
Number of extensions: 304230
Number of successful extensions: 753
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)