Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L15
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 284 FLQRRSSQKVTYPDYYTNACCSHPLYIDEKP 376
           +L+    QK  YP YY     S+ L   ++P
Sbjct: 281 YLEEFDWQKPFYPGYYPTMTYSNGLPFPQRP 311


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 452 LFTFMTRVHYHDPGDGVWGE 511
           LF+F+  + Y  P   +WG+
Sbjct: 150 LFSFLNTIVYCVPAGWIWGD 169


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = +2

Query: 5   CWSASSQAHCGAP*ASSKAFWLQSPVK 85
           CW+      C  P  +     L+ PVK
Sbjct: 159 CWTQDEDVICSTPIGNLSHALLKDPVK 185



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 361 VQWMAAASICVVIGICYF 308
           ++W  A ++ VV  +CYF
Sbjct: 205 IRWELAGTLAVVWIMCYF 222


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 361 VQWMAAASICVVIGICYF 308
           ++W  A ++ VV  +CYF
Sbjct: 258 IRWELAGTLAVVWIMCYF 275



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = +2

Query: 5   CWSASSQAHCGAP*ASSKAFWLQSPVK 85
           CW+      C  P  +     L+ PVK
Sbjct: 212 CWTQDEDIICSTPIGNLSHALLKDPVK 238


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 305 QKVTYPDYYTNACCSHPLYIDEKP 376
           QK  YP YY     S+ L   ++P
Sbjct: 288 QKPFYPGYYPTMTYSNGLPFPQRP 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,104
Number of Sequences: 438
Number of extensions: 3364
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)