Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L13
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)             151   4e-37
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)            75   4e-14
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   6e-11
SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)            33   0.31 
SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)                    29   3.8  
SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    28   8.9  
SB_46808| Best HMM Match : Paramecium_SA (HMM E-Value=4.2)             28   8.9  

>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score =  151 bits (367), Expect = 4e-37
 Identities = 79/205 (38%), Positives = 114/205 (55%), Gaps = 1/205 (0%)
 Frame = +3

Query: 87  VVIASAVSTPXGSFRGXXXXXXXXXXXXXXXNAAIERAGIPKEEIKEVYIGNVCSANLGQ 266
           V+IA AV TP GS  G                 A+ RA I   ++ EV +G V +A  GQ
Sbjct: 10  VIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEVILGQVLTAGQGQ 69

Query: 267 APARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPF 446
            PARQA I AG+P       VN +C SG+K++ L  Q +  G  +I++AGG ESMS  P 
Sbjct: 70  GPARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNIVVAGGQESMSQAPH 129

Query: 447 YL-KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNSYK 623
               R    +G M L+D ++ DGL D +N +HMG  AEN AK+ +++ ++QD +A+ S +
Sbjct: 130 CCHMRPALKFGDMTLIDTMLKDGLMDSFNNYHMGITAENVAKQWEVSREEQDNFALTSQQ 189

Query: 624 RSAAAYEAKAFVDELVPVPVPQKRG 698
           R+  A +A  F DE+V V +  + G
Sbjct: 190 RTETAQKAGYFSDEIVTVSIKTRAG 214


>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 33/62 (53%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
 Frame = +3

Query: 543 GNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAP-VIFAE 719
           G CAEN A K  IT ++QD+YA++SY+R+AAA++A  F  E+VPV +PQK+G P ++F E
Sbjct: 59  GVCAENAASKYNITREEQDDYAIHSYRRTAAAWDAGKFKQEVVPVNIPQKKGKPDIVFEE 118

Query: 720 XE 725
            E
Sbjct: 119 DE 120



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 11/60 (18%)
 Frame = +3

Query: 258 LGQAPARQAVIFAG-----------LPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDI 404
           +GQAPARQA + AG           LP ST CTT+NKVCASGMKSIM AAQ L  G+Q +
Sbjct: 1   MGQAPARQAALGAGTRXVTSIRDQALPISTPCTTINKVCASGMKSIMAAAQSLMCGSQGV 60


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 38/83 (45%), Positives = 53/83 (63%)
 Frame = +3

Query: 477  GMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYEAKAF 656
            G Q+ D + + GLTD+     MG  AEN A+K  IT ++ D++A+ S +R AAA+E+ AF
Sbjct: 799  GAQMEDTL-WQGLTDMLPGLPMGITAENLAEKYNITREECDQFALLSQQRWAAAHESGAF 857

Query: 657  VDELVPVPVPQKRGAPVIFAEXE 725
              E+VPVPV  K+G P  FA  E
Sbjct: 858  TAEIVPVPVKGKKG-PEQFAVDE 879


>SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)
          Length = 162

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 540 MGNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYEAKAFVDEL 668
           MG+ A+  A    ++ Q+QDEYA+ S+  +  A +A    D L
Sbjct: 13  MGHSADRLASAFHVSRQEQDEYALRSHTLAHQATQAGKLTDVL 55


>SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 485 LHSSIRSFTSLQIKRYI*HRFHPTSKYYILGSSL*TLCCQ-HYRFHARGTYFVYSCTYGT 309
           +HS+ R+  +    RY     H T     + S+  TLC Q H R+  + T+ +YS T+  
Sbjct: 102 MHSNTRTLCTKTHARYALKHTHTT-----MHSNTRTLCTQTHARYALKHTHTMYSNTHTL 156

Query: 308 FWQTCKYYSL 279
             QT  +Y+L
Sbjct: 157 CTQTHAHYAL 166


>SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)
          Length = 1433

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
 Frame = +3

Query: 492  DGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYE-------AK 650
            DG+VFD   ++ +   M  C+ N  K   +  Q   E+   +Y R +A          A 
Sbjct: 1214 DGVVFDAAIELAHPSDMWVCSTN--KMGALVQQRLIEHHRKNYPRLSATIRFDPDPSVAH 1271

Query: 651  AFVDELVPVPVPQKRGAPV 707
             +  +  PVPVP KRG  V
Sbjct: 1272 RYRKQERPVPVPGKRGEKV 1290


>SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 236 WQCLFCKFGPSTCKTSCNICRFAKKY-HMYNCK-QSMCLWHEIYNVGSTR 379
           W+C   K  PS  ++   +  F KKY H +    +S  LW+  Y + + R
Sbjct: 80  WECEHVKPVPSDVRSKMRLSGFYKKYLHAFGIPVRSNTLWYRTYAMSTDR 129


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 236 WQCLFCKFGPSTCKTSCNICRFAKKYHMYNCKQSMCL 346
           WQ  + + GP   KTSC +C    KY++ N     CL
Sbjct: 864 WQSNYTQCGPCASKTSCPVCNI--KYNL-NDLMIQCL 897


>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 27/102 (26%), Positives = 41/102 (40%)
 Frame = +3

Query: 189 IERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIML 368
           I + GI  EEI      +V  A +        + + G PKS +CT+VN+V   G+ +   
Sbjct: 72  IVKVGITTEEIDY----HVHKAIIEHGAYPSPLNYRGFPKS-VCTSVNEVAVHGIPNSRC 126

Query: 369 AAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVD 494
              G        +  GG+       F +  G     G +LVD
Sbjct: 127 LQNGDLLSVDISLFYGGVHGDLCETFLV--GNVDESGRRLVD 166


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 520 SVSPSNTIPSTNCIPPYEVSP 458
           +++PSNT+P TNC P  E +P
Sbjct: 928 ALNPSNTVP-TNCCPSGETTP 947


>SB_46808| Best HMM Match : Paramecium_SA (HMM E-Value=4.2)
          Length = 191

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 243 VCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDI 404
           VCSA LG +PA+  V FA L      T         + SIM +   +Q  ++ +
Sbjct: 67  VCSAELGVSPAKLCVSFAELIIGDSLTVDQAKAQMAIWSIMASNNAIQVWSRPL 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,918,459
Number of Sequences: 59808
Number of extensions: 413991
Number of successful extensions: 1208
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)