Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_L12
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 410 e-115
SB_56| Best HMM Match : Actin (HMM E-Value=0) 409 e-115
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 409 e-115
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 408 e-114
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 305 2e-83
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 212 2e-55
SB_54| Best HMM Match : Actin (HMM E-Value=0) 208 2e-54
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 203 9e-53
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 193 9e-50
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 171 3e-43
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 105 2e-23
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 74 9e-14
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 67 1e-11
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 54 1e-07
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 44 8e-05
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 40 0.002
SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5) 32 0.36
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 1.1
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 30 1.9
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027) 29 3.3
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56) 29 4.4
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6) 28 7.7
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 410 bits (1010), Expect = e-115
Identities = 196/217 (90%), Positives = 199/217 (91%)
Frame = +3
Query: 6 VAALVVXNGSGMCKXXXXXXXXXXXXXXSIVGRPRHQGVMVGMGQXXSYVGDEAQSKRGI 185
VAALVV NGSGMCK SIVGRPRHQGVMVGMGQ SYVGDEAQSKRGI
Sbjct: 5 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 64
Query: 186 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 365
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 366 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 545
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct: 125 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 546 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLXYVAL 656
LTDYLMKILTERGYSFTTTAEREIVRDIKEKL YVAL
Sbjct: 185 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVAL 221
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 409 bits (1008), Expect = e-115
Identities = 196/217 (90%), Positives = 199/217 (91%)
Frame = +3
Query: 6 VAALVVXNGSGMCKXXXXXXXXXXXXXXSIVGRPRHQGVMVGMGQXXSYVGDEAQSKRGI 185
VAALVV NGSGMCK SIVGRPRHQGVMVGMGQ SYVGDEAQSKRGI
Sbjct: 5 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 64
Query: 186 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 365
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 366 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 545
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct: 125 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 546 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLXYVAL 656
LTDYLMKILTERGYSFTTTAEREIVRDIKEKL YVAL
Sbjct: 185 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 221
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 409 bits (1008), Expect = e-115
Identities = 196/217 (90%), Positives = 199/217 (91%)
Frame = +3
Query: 6 VAALVVXNGSGMCKXXXXXXXXXXXXXXSIVGRPRHQGVMVGMGQXXSYVGDEAQSKRGI 185
VAALVV NGSGMCK SIVGRPRHQGVMVGMGQ SYVGDEAQSKRGI
Sbjct: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 186 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 365
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 366 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 545
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
Query: 546 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLXYVAL 656
LTDYLMKILTERGYSFTTTAEREIVRDIKEKL YVAL
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 222
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 408 bits (1005), Expect = e-114
Identities = 194/217 (89%), Positives = 199/217 (91%)
Frame = +3
Query: 6 VAALVVXNGSGMCKXXXXXXXXXXXXXXSIVGRPRHQGVMVGMGQXXSYVGDEAQSKRGI 185
+AALVV NGSGMCK SIVGRPRHQGVMVGMGQ SYVGDEAQSKRGI
Sbjct: 6 IAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 186 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 365
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 366 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 545
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRD
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRD 185
Query: 546 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLXYVAL 656
LTDYLMKILTERGYSFTTTAEREIVRDIKEKL YVAL
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 222
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 305 bits (749), Expect = 2e-83
Identities = 159/217 (73%), Positives = 165/217 (76%)
Frame = +3
Query: 6 VAALVVXNGSGMCKXXXXXXXXXXXXXXSIVGRPRHQGVMVGMGQXXSYVGDEAQSKRGI 185
+AALV+ NGSGMCK SIVGRPRHQGVMVGMGQ SYVGDEAQSKRGI
Sbjct: 6 IAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 186 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 365
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 366 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 545
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DS G + H +
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDS------------GDGVSHTV--------- 164
Query: 546 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLXYVAL 656
I ERGYSFTTTAEREIVRDIKEKL YVAL
Sbjct: 165 ------PIYEERGYSFTTTAEREIVRDIKEKLCYVAL 195
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 212 bits (517), Expect = 2e-55
Identities = 103/217 (47%), Positives = 141/217 (64%), Gaps = 3/217 (1%)
Frame = +3
Query: 9 AALVVXNGSGMCKXXXXXXXXXXXXXXSIVGRP--RHQGVMVGMGQXXSYVGDEAQSKRG 182
+ +V NG+G K S+VGRP R + + VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 183 ILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 359
+L + YP+++GI+ NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 360 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 539
MFE + +Y+AIQAVL+LYA G TG+V+DSGDGV+H P+YEG+ALPH RLD+AG
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAG 186
Query: 540 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLXYV 650
RD+T YL+K++ RGY+F TA+ E VR +KEKL YV
Sbjct: 187 RDITKYLIKLMLLRGYAFNHTADFETVRMMKEKLCYV 223
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 208 bits (509), Expect = 2e-54
Identities = 94/138 (68%), Positives = 116/138 (84%)
Frame = +3
Query: 243 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 422
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 423 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 602
ASGRTTG V D GDGVSHTVP+Y+GY LPHA R+DLAGRDLT YL +++TERGYSF +T
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQST 2248
Query: 603 AEREIVRDIKEKLXYVAL 656
AE++I+RD+KE L Y A+
Sbjct: 2249 AEQQIIRDLKETLCYCAM 2266
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 15 LVVXNGSGMCKXXXXXXXXXXXXXXSIVGRPRHQ 116
+V+ NGSG CK +IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 203 bits (496), Expect = 9e-53
Identities = 98/107 (91%), Positives = 103/107 (96%)
Frame = +3
Query: 336 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 515
N + M +IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 516 ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLXYVAL 656
I+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL YVAL
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 184
Score = 135 bits (327), Expect = 3e-32
Identities = 64/86 (74%), Positives = 66/86 (76%)
Frame = +3
Query: 6 VAALVVXNGSGMCKXXXXXXXXXXXXXXSIVGRPRHQGVMVGMGQXXSYVGDEAQSKRGI 185
VAALV+ NGSGMCK SIVGRPRHQGVMVGMGQ SYVGDEAQSKRGI
Sbjct: 5 VAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 64
Query: 186 LTLKYPIEHGIITNWDDMEKIWHHTF 263
LTLKYPIEHGI+TNWDDMEKI TF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 193 bits (471), Expect = 9e-50
Identities = 92/100 (92%), Positives = 96/100 (96%)
Frame = +3
Query: 357 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 536
IMFE FNSPA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 537 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLXYVAL 656
GRDLTDYLMK++TERGYSFTTTAEREIVRDIKEKL YVAL
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVAL 100
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 171 bits (417), Expect = 3e-43
Identities = 74/116 (63%), Positives = 101/116 (87%)
Frame = +3
Query: 291 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 470
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 471 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 638
SH+VPIYEG+A+PH+I+R D+AGRD++ YL +L + G+ F +++E EIVR IKE+
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 105 bits (253), Expect = 2e-23
Identities = 48/126 (38%), Positives = 80/126 (63%)
Frame = +3
Query: 201 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 380
PI+ G+I +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 381 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 560
PA ++ +VL+ +A+GR+ G+V+DSG + VP+++GY L AI+R LAG +T
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQC 122
Query: 561 MKILTE 578
++ E
Sbjct: 123 RQMFEE 128
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 74.1 bits (174), Expect = 9e-14
Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +3
Query: 402 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL-TE 578
Q LSLYASG T G+ L SG + IYEG+ L H + L++ G LT+ L + L +
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 579 RGYSFTTTAEREIVRDIKEKLXYVA 653
RG++FT+++ +IV DIKEK+ Y++
Sbjct: 827 RGHNFTSSSGWQIVNDIKEKICYLS 851
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Frame = +3
Query: 396 AIQAVLSLYASG-------RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 551
A +AVL+L AS RT TG V+DSGDGV+H +P+ EGY + I + +AGRD+T
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 552 DYLMKILTERGYSFTTTAEREIVRDIKEKLXYV 650
++ ++L ER E + IKE+ Y+
Sbjct: 100 FFVQQLLREREMGIPPEQSMETAKTIKERWGYI 132
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/60 (40%), Positives = 33/60 (55%)
Frame = +3
Query: 129 GMGQXXSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 308
G+ ++GDEA K T K+PI H I+ +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 438 TGIVLDSGDGVSHTVPI 488
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 44.4 bits (100), Expect = 8e-05
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Frame = +3
Query: 150 YVGDEAQSKRGILTLKY--PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 323
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE----------------- 315
Query: 324 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLY------ASGRTTGIVLDSGDGVSHTVP 485
+ M +I+FE +N A+ A LS Y S +V+D+G +H VP
Sbjct: 316 ---GLEDAMDEILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVP 372
Query: 486 IYEGYALPHAILR 524
++ G + A+ R
Sbjct: 373 VFNGKVIKKAVRR 385
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +3
Query: 246 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 425
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 426 SGRTTGIV 449
+GIV
Sbjct: 572 YSAVSGIV 579
>SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5)
Length = 257
Score = 32.3 bits (70), Expect = 0.36
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -3
Query: 614 FPLSGGGERVTPLGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGV----GDTISGVEH 447
F +SG + D H++ + +TS V+ + G + D + T S E
Sbjct: 134 FGISGTANTEEQIDVDKHQITNKASTSSVEKANTAGTTGGTQDQHATQGNKASTCSFEEA 193
Query: 446 DTGGTTGGVQ 417
+T GTTGG Q
Sbjct: 194 NTAGTTGGTQ 203
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 192 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 344
L+ P + ++T+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 333 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 449
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 578 LGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGVGDTISGVEHDTGG 435
L E + +V Q + GV S G+G G TISG D+GG
Sbjct: 1474 LQEAMMPIVSQQTCAAAMRRWGVVTSRMICGGFGAGSTISGCFGDSGG 1521
>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
Length = 645
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 353 GHLLPVGLGVEGGFGEQHGVLLGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSL 174
G +L V LG+ GFG V G + + GV+P L+ I + D ++ + +D SL
Sbjct: 157 GGILAVALGILAGFGLAMAV---GTPFISLAGVLPFLILGIGIDDMFIIINEMDRQDNSL 213
Query: 173 AL 168
++
Sbjct: 214 SV 215
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/73 (21%), Positives = 30/73 (41%)
Frame = -1
Query: 538 PAKSRRRMAWGRA*PS*MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELKVSNM 359
P+ + +W P T W +PSP+ T P ++T+W + +S++
Sbjct: 93 PSPQYKTTSWSLPLPQHKTTSWSSPSPKYKTTSWTSPSPQYKTTSWSSPLPQQTTFLSSL 152
Query: 358 IWVIFSLLALGLR 320
+I L + R
Sbjct: 153 YHIIGRLSGVHYR 165
>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
Length = 466
Score = 29.1 bits (62), Expect = 3.3
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Frame = -1
Query: 478 VWE--TPSPESSTIPVVRPE-------AYSESTAWMATYMAGELKVSNMIWVIFSLLALG 326
VWE T P + T+P + + Y S +W+ L N ++++F +LG
Sbjct: 3 VWELSTTGPTNRTVPTIIIDYAICTEVLYKTSGSWIRICDI-VLLAPNAMFMVFLFYSLG 61
Query: 325 LRGASVSSTGCSSGATRSSL*KVWCQIFSMSSQLVMIPCSMGYFRVRIPLLLWAS 161
L A + T C T +L ++ ++++SQ+ + C + R +LL AS
Sbjct: 62 LAHAKLVGTRCPIVKTIYTLLLLYGIHYTLNSQVFAV-CVVSVARCFASMLLTAS 115
>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
Length = 654
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 521 EDGVGQSVTFVDGYGVGDTISGVEHDTGGTTGG 423
+DG G VDG GVGD G + D G GG
Sbjct: 9 DDGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGG 41
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 336 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 485
NR + +++ E S ++ + +L+LY RT D+ + HT P
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 321 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 449
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6)
Length = 188
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = -1
Query: 487 MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELK-VSNMIWVIFSLLALGLRGAS 311
M + + PSP P+A+ + A Y +G LK S V + L+ G G
Sbjct: 1 MAELADLPSPRMDWSSTDLPQAFKKFRATCELYFSGPLKEKSEPDKVSYLLIWTGDEGIE 60
Query: 310 VSSTGCSSGATRSSL*KVW 254
+SST S L W
Sbjct: 61 LSSTWALSADDSKKLDTYW 79
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,281,519
Number of Sequences: 59808
Number of extensions: 301397
Number of successful extensions: 1078
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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