Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L10
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    29   0.86 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    29   0.86 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    28   1.5  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.0  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    27   2.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.6  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   3.5  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 430 HQKRTLAFVNHFLTINVQFLNNFM 501
           H KR L F+N FL+I+V F + ++
Sbjct: 404 HSKRKLRFINRFLSISVPFHSPYL 427


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 276 LVFSLEQNKFKPPNHKTNFFSSCLYSTENDHPRRFTSI 389
           L+ SL  NK  P       F+  LY T+ND  ++ +SI
Sbjct: 14  LLNSLNDNKGIPSTEFVEKFAESLYETQNDGSKKLSSI 51


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 499 MRNCEQKLMQFERKLEKVNAAMVLLESKLSSIPE 600
           +RN E+KL+Q   + + +     LLE++LS I E
Sbjct: 66  LRNSEKKLLQSNERYDLLEDERKLLENELSQIKE 99


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/39 (23%), Positives = 25/39 (64%)
 Frame = +1

Query: 478 VQFLNNFMRNCEQKLMQFERKLEKVNAAMVLLESKLSSI 594
           V++LNN +  C++   + +  + K++  ++ ++++L SI
Sbjct: 151 VKYLNNKLAVCDRNYSEAQHNISKISPELIGIQTRLVSI 189


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 466 LTINVQFLNNFMRNCEQKLMQFERKLEKVNAAMVLLESKL 585
           L   V FL+  + + E+KLMQ   K+++V A    L+  L
Sbjct: 163 LVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENKRLQQLL 202


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
 Frame = -2

Query: 602  NSGIEDNL-DSNKTMAALTFSNFL-------SNCIS--FCSQFLIKLFRNC 480
            NS I+D + +SN++M  L    FL        N ++   C+Q+L+KL  NC
Sbjct: 1182 NSDIKDCIVESNESMNYLLLKRFLFTHESTLRNSVTARMCNQYLVKLLENC 1232


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -2

Query: 575 SNKTMAALTFSNF---LSNCISFCSQFLIKLFRNCTFI 471
           +N T A   FSN+   L NC+  C  FL   F + TF+
Sbjct: 787 NNLTEARKNFSNYRDCLENCVLPCVPFLGVYFTDLTFL 824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,988
Number of Sequences: 5004
Number of extensions: 41968
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)