Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L10
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0270 - 13675169-13675334,13676902-13676984,13677057-13677302     46   3e-05
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128...    30   2.1  
02_05_0436 - 28971733-28972020,28972178-28972525,28972738-289729...    28   6.3  

>04_03_0270 - 13675169-13675334,13676902-13676984,13677057-13677302
          Length = 164

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 21/49 (42%), Positives = 32/49 (65%)
 Frame = +1

Query: 454 VNHFLTINVQFLNNFMRNCEQKLMQFERKLEKVNAAMVLLESKLSSIPE 600
           VN F+   V+FLN+F   C  KL    RK+ K+++++ LLE+KL SI +
Sbjct: 83  VNMFIANTVEFLNSFAAQCNDKLSLLHRKIVKLDSSLNLLEAKLRSIDD 131


>04_01_0123 -
           1283197-1283292,1283330-1284439,1284790-1285177,
           1285523-1287609
          Length = 1226

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 294 QNKFKPPNHKTNFFSSCLYSTENDHPRRFTSIRIPTNGFN*GCGITSKTYIGIR 455
           +N+   P+  ++  SS  +S+ + HPRR    R PT+  N GC   S++   +R
Sbjct: 385 RNRTPEPSDPSSSSSSASFSSSDRHPRRTHDRRQPTDP-NAGCRAFSRSLRDVR 437


>02_05_0436 -
           28971733-28972020,28972178-28972525,28972738-28972920,
           28973096-28973170,28973238-28973392,28973540-28974043,
           28975889-28975964
          Length = 542

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 493 NFMRNCEQKLMQFERKLEKVNAAMVLLESKLSSIP 597
           NFM++   +L +    +E+V   M LL+S+  S+P
Sbjct: 400 NFMKDSSSELDKMSMCIERVETLMQLLKSRFPSLP 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,165,177
Number of Sequences: 37544
Number of extensions: 222163
Number of successful extensions: 406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)