Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L10
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8209| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_27802| Best HMM Match : Filament (HMM E-Value=0.2)                  28   6.4  
SB_5426| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  

>SB_8209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
 Frame = +1

Query: 325 QTFFRLVYILLKMTIQEDLPQSESPQTDLTKVAALHQKRTLAFVNH--FLTINVQFLNNF 498
           Q+F   V   +K  I+  L Q E    D + +  L +  T+   N   F+T  V+ +   
Sbjct: 122 QSFEESVQYQIKEIIETLLQQVEHGGLDASAITKLLKHTTVYLSNQCRFITFQVEDMEQL 181

Query: 499 MRNCEQKLMQFERKLEKVNAAMVLLESKLSSIPELD 606
              CE+   Q      K +     LE ++  +  L+
Sbjct: 182 KTKCERYKSQLHEHEFKASELKAALERRVKDVERLE 217


>SB_27802| Best HMM Match : Filament (HMM E-Value=0.2)
          Length = 528

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 493 NFMRNCEQKLMQFERKLEKVNAAMVLLE 576
           N   NC++KLM+ ER++ +  A +  LE
Sbjct: 189 NLAANCDEKLMKLEREIREKTARITELE 216


>SB_5426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +1

Query: 496 FMRNCEQKLMQFERKLEKVNAAMVLLESKLSSI 594
           F+RNC ++L++ E + E ++A  ++ + K  S+
Sbjct: 38  FIRNCIEQLLEDEEERETMSATEIIAQQKFESM 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,911,533
Number of Sequences: 59808
Number of extensions: 278519
Number of successful extensions: 790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)