Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L10
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-10|AAB54251.1|  189|Caenorhabditis elegans Hypothetical...    38   0.005
AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical ...    28   5.7  
AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical ...    28   5.7  
U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...    28   7.5  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    27   9.9  

>AF003386-10|AAB54251.1|  189|Caenorhabditis elegans Hypothetical
           protein F59E12.10 protein.
          Length = 189

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +1

Query: 397 PQTDLTKVAALHQKRTLAFVNHFLTINVQFLNNFMRNCEQKLMQFERKLEKVNAAMVLLE 576
           P  DL KV  +   RT    N  +    + LNNF    E  L + E+ L+  +  + L+E
Sbjct: 9   PAIDLNKVPPIDHHRTAVTFNCLIMKMTEMLNNFGNKMEDILEKAEQSLDTADRKLRLME 68

Query: 577 SKLSSI 594
           SKL+ +
Sbjct: 69  SKLAGM 74


>AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical
           protein Y26D4A.14 protein.
          Length = 952

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +3

Query: 336 SSCLYSTEN----DHPRRFTSIRIPTNGFN*GC-GITSKTYIGIRKSFPNNKCT 482
           SS  +ST N    D+P RFTS+  P   +   C  I +K Y    ++ P N  T
Sbjct: 44  SSKTWSTNNKITVDYPNRFTSLFTPKRYYKENCIVIETKVYSHFNQTKPTNVLT 97


>AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical
           protein Y40C7B.1 protein.
          Length = 916

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +3

Query: 336 SSCLYSTEN----DHPRRFTSIRIPTNGFN*GC-GITSKTYIGIRKSFPNNKCT 482
           SS  +ST N    D+P RFTS+  P   +   C  I +K Y    ++ P N  T
Sbjct: 44  SSKTWSTNNKITVDYPNRFTSLFTPKRFYKENCIVIETKVYSHFNQTKPTNVLT 97


>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 475 NVQFLNNFMRNCEQKLMQFERKLE 546
           NV+FLNN +++  QKL   ++KL+
Sbjct: 259 NVEFLNNQIQDINQKLSAVDKKLQ 282


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 337  RLVYILLKMTIQEDLPQSESPQTDLTKVAA 426
            +++  LLK++I E+LP SE  +  +T++ A
Sbjct: 2989 KIIEKLLKVSIDENLPTSEDARQYITRIVA 3018


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 337  RLVYILLKMTIQEDLPQSESPQTDLTKVAA 426
            +++  LLK++I E+LP SE  +  +T++ A
Sbjct: 2989 KIIEKLLKVSIDENLPTSEDARQYITRIVA 3018


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 337  RLVYILLKMTIQEDLPQSESPQTDLTKVAA 426
            +++  LLK++I E+LP SE  +  +T++ A
Sbjct: 2989 KIIEKLLKVSIDENLPTSEDARQYITRIVA 3018


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,303,828
Number of Sequences: 27780
Number of extensions: 230365
Number of successful extensions: 583
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)